Sodium in PDB 2hub: Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5

All present enzymatic activity of Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5:
3.2.1.17;

The structure of Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5, PDB code: 2hub was solved by F.Frolow, S.Lagziel-Simis, N.Cohen-Hadar, Y.Wine, A.Freeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.31 / 1.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	76.861, 76.861, 35.867, 90.00, 90.00, 90.00
R / Rfree (%)	13.7 / 17.3

The binding sites of Sodium atom in the Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5 (pdb code 2hub). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5, PDB code: 2hub:

Sodium binding site 1 out of 1 in the Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hen Egg-White Lysozyme Determined From Crystals Grown in pH 7.5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na6001 b:15.3 occ:1.00 OD2 A:ASP66 2.7 9.9 1.0 OG1 A:THR51 2.7 10.4 1.0 NE A:ARG68 2.9 11.9 1.0 O A:GLY49 3.0 14.2 1.0 OG1 A:THR69 3.1 10.2 1.0 N A:THR51 3.4 9.5 1.0 C A:SER50 3.4 9.5 1.0 CB A:THR51 3.5 8.8 1.0 CG A:ARG68 3.5 12.5 1.0 NH1 A:ARG45 3.7 24.5 1.0 CA A:SER50 3.7 10.5 1.0 CG A:ASP66 3.7 9.4 1.0 OG A:SER60 3.8 9.7 1.0 CD A:ARG68 3.8 11.3 1.0 CZ A:ARG68 3.8 11.2 1.0 NH2 A:ARG68 3.8 11.1 1.0 OD1 A:ASP66 3.9 9.9 1.0 O A:SER50 4.0 10.3 1.0 C A:GLY49 4.0 11.6 1.0 CA A:THR51 4.0 8.3 1.0 CZ A:ARG45 4.3 30.4 1.0 N A:SER50 4.3 10.8 1.0 OH A:TYR53 4.4 9.4 1.0 CD A:ARG45 4.4 27.2 1.0 CB A:THR69 4.4 10.4 1.0 O A:ARG68 4.5 16.9 1.0 C A:ARG68 4.6 11.9 1.0 NE A:ARG45 4.6 35.8 1.0 CA A:THR69 4.7 11.5 1.0 N A:THR69 4.7 11.8 1.0 CB A:SER60 4.7 10.0 1.0 CG2 A:THR51 4.8 10.4 1.0 CB A:ARG68 4.8 11.8 1.0 CG2 A:THR69 4.9 12.4 1.0 CB A:SER50 5.0 10.8 1.0

S.Lagziel-Simis, Y.Wine, N.Cohen-Hadar, A.Freeman, F.Frolow. Monitoring Influence of pH on the Molecular and Crystal Structure of Hen Egg-White Tetragonal Lysozyme To Be Published.