Sodium in PDB 2hig: Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei.

All present enzymatic activity of Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei.:
2.7.1.11;

The structure of Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei., PDB code: 2hig was solved by J.Martinez-Oyanedel, I.W.Mcnae, L.A.Fothergill-Gilmore, M.D.Walkinshaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.45 / 2.40
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	118.765, 92.497, 79.534, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 23.8

The binding sites of Sodium atom in the Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. (pdb code 2hig). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei., PDB code: 2hig:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na488 b:46.5 occ:1.00 O A:ALA262 2.6 45.8 1.0 O A:ALA259 2.7 41.1 1.0 OG A:SER318 2.7 42.4 1.0 O A:ARG317 3.1 44.9 1.0 CA A:VAL260 3.3 41.3 1.0 O A:VAL260 3.3 42.9 1.0 C A:VAL260 3.3 41.2 1.0 C A:ARG317 3.4 45.5 1.0 CB A:ARG317 3.6 50.1 1.0 C A:ALA259 3.6 40.6 1.0 C A:ALA262 3.7 45.5 1.0 CB A:SER318 3.8 42.1 1.0 N A:SER318 3.8 42.6 1.0 N A:VAL260 3.9 41.2 1.0 CA A:SER318 4.0 42.0 1.0 N A:ALA262 4.0 42.8 1.0 N A:SER261 4.1 41.5 1.0 CA A:ARG317 4.1 48.2 1.0 N A:TYR264 4.4 46.1 1.0 CA A:ALA262 4.5 44.1 1.0 N A:GLY265 4.5 40.3 1.0 N A:ASN263 4.5 47.8 1.0 CG2 A:VAL260 4.5 44.5 1.0 CB A:VAL260 4.5 43.2 1.0 CA A:ASN263 4.6 48.7 1.0 O A:HOH516 4.6 51.6 1.0 C A:SER261 4.8 43.3 1.0 C A:ASN263 4.9 46.5 1.0 CA A:SER261 4.9 43.2 1.0 CG A:ARG317 5.0 54.5 1.0 CA A:ALA259 5.0 38.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na488 b:44.5 occ:1.00 O B:ALA262 2.5 39.1 1.0 OG B:SER318 2.5 37.0 1.0 O B:HOH532 2.5 43.2 1.0 O B:ALA259 2.6 33.6 1.0 O B:ARG317 2.7 37.5 1.0 C B:ARG317 3.2 38.2 1.0 O B:VAL260 3.4 32.5 1.0 CB B:SER318 3.4 33.4 1.0 CA B:VAL260 3.4 33.1 1.0 C B:VAL260 3.5 33.2 1.0 C B:ALA259 3.6 33.5 1.0 C B:ALA262 3.6 38.7 1.0 CA B:SER318 3.6 34.3 1.0 N B:SER318 3.7 35.5 1.0 CB B:ARG317 3.8 44.6 1.0 N B:VAL260 3.9 34.7 1.0 N B:ALA262 4.0 36.7 1.0 N B:GLY265 4.1 33.9 1.0 CA B:ARG317 4.2 41.8 1.0 N B:TYR264 4.3 36.4 1.0 CA B:ALA262 4.3 38.5 1.0 N B:SER261 4.4 33.8 1.0 N B:ASN263 4.5 38.6 1.0 CA B:ASN263 4.6 39.1 1.0 CA B:GLY265 4.7 32.7 1.0 CB B:VAL260 4.8 32.9 1.0 C B:ASN263 4.8 37.5 1.0 CG2 B:VAL260 4.8 34.6 1.0 CA B:ALA259 4.9 31.9 1.0 C B:SER261 4.9 36.6 1.0

J.Martinez-Oyanedel, I.W.Mcnae, M.W.Nowicki, J.W.Keillor, P.A.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw. The First Crystal Structure of Phosphofructokinase From A Eukaryote: Trypanosoma Brucei. J.Mol.Biol. V. 366 1185 2007.
ISSN: ISSN 0022-2836
PubMed: 17207816
DOI: 10.1016/J.JMB.2006.10.019