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Sodium in PDB 2hi0: Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution

Enzymatic activity of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution

All present enzymatic activity of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution:
3.1.3.18;

Protein crystallography data

The structure of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution, PDB code: 2hi0 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.73 / 1.51
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.636, 38.695, 103.583, 90.00, 98.09, 90.00
R / Rfree (%) 15.7 / 19

Other elements in 2hi0:

The structure of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution (pdb code 2hi0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution, PDB code: 2hi0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2hi0

Go back to Sodium Binding Sites List in 2hi0
Sodium binding site 1 out of 2 in the Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na240

b:35.3
occ:1.00
 OD2 A:ASP9 2.1 29.5 1.0
OD1 A:ASP189 2.3 15.4 1.0
O A:ASP11 2.5 12.7 1.0
O A:HOH382 2.7 22.5 1.0
CG A:ASP189 3.3 14.5 1.0
O A:HOH461 3.3 33.3 1.0
CG A:ASP9 3.3 17.6 1.0
OD2 A:ASP189 3.4 12.5 1.0
C A:ASP11 3.5 10.9 1.0
CB A:ASP11 3.8 13.7 1.0
OD1 A:ASP9 4.0 17.4 1.0
OD2 A:ASP193 4.1 15.1 1.0
CA A:ASP11 4.1 12.5 1.0
O A:HOH335 4.1 20.4 1.0
O A:HOH281 4.2 16.4 1.0
N A:ASP11 4.3 11.1 1.0
OG1 A:THR13 4.3 12.6 1.0
O A:HOH440 4.3 33.4 1.0
CB A:ASP9 4.3 14.4 1.0
O A:HOH346 4.5 23.7 1.0
N A:GLY12 4.6 11.1 1.0
CB A:ASP189 4.7 12.2 1.0
N A:ASP189 4.7 12.6 1.0
OG A:SER190 4.8 17.4 1.0
CA A:GLY12 4.9 11.4 1.0
CB A:SER190 4.9 15.5 1.0
CG A:ASP193 5.0 16.9 1.0

Sodium binding site 2 out of 2 in 2hi0

Go back to Sodium Binding Sites List in 2hi0
Sodium binding site 2 out of 2 in the Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Putative Phosphoglycolate Phosphatase (YP_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 at 1.51 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na240

b:18.9
occ:1.00
 O B:HOH565 2.1 23.7 1.0
OD2 B:ASP9 2.1 25.3 1.0
O B:ASP11 2.3 14.4 1.0
O B:HOH413 2.4 18.8 1.0
OD1 B:ASP189 2.4 15.6 1.0
O B:HOH498 2.9 34.0 1.0
CG B:ASP189 3.3 16.6 1.0
CG B:ASP9 3.3 15.6 1.0
OD2 B:ASP189 3.4 14.7 1.0
C B:ASP11 3.5 12.1 1.0
O B:HOH445 3.9 24.4 1.0
OD2 B:ASP193 4.0 15.6 1.0
OD1 B:ASP9 4.0 15.7 1.0
CB B:ASP9 4.3 11.8 1.0
OG1 B:THR13 4.3 14.3 1.0
N B:GLY12 4.4 11.9 1.0
CA B:ASP11 4.4 12.1 1.0
CA B:GLY12 4.4 12.6 1.0
CB B:ASP11 4.5 11.8 1.0
O B:HOH562 4.5 47.0 1.0
N B:ASP11 4.6 10.2 1.0
O B:HOH388 4.7 22.4 1.0
CB B:ASP189 4.7 11.9 1.0
C B:GLY12 4.8 13.0 1.0
N B:ASP189 4.8 9.6 1.0
OG B:SER190 4.8 12.8 1.0
N B:THR13 4.8 11.2 1.0
CG B:ASP193 4.9 10.7 1.0
O B:HOH346 5.0 23.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Oct 7 02:46:51 2024

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