Sodium in PDB 2heu: Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae

The structure of Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae, PDB code: 2heu was solved by N.G.Paterson, A.Riboldi-Tunnicliffe, T.J.Mitchell, N.W.Isaacs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.82 / 1.04
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.219, 129.315, 119.420, 90.00, 94.21, 90.00
R / Rfree (%)	13 / 15.7

The structure of Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae (pdb code 2heu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae, PDB code: 2heu:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4001 b:21.1 occ:1.00 O A:HOH4750 2.3 37.1 1.0 O A:LYS103 2.3 19.4 1.0 O A:HOH4503 2.4 30.2 1.0 OE2 A:GLU335 2.4 30.1 1.0 O A:HOH4346 2.4 24.3 1.0 OE1 A:GLU335 2.5 26.4 1.0 CD A:GLU335 2.8 24.8 1.0 C A:LYS103 3.5 17.3 1.0 CG A:GLU335 4.3 22.4 1.0 OD1 A:ASN107 4.3 26.4 1.0 O A:VAL105 4.3 16.4 1.0 O A:HOH4251 4.3 24.0 1.0 CA A:LYS103 4.4 18.9 1.0 O A:HOH4380 4.5 29.9 1.0 N A:ARG104 4.5 15.7 1.0 O A:HOH4229 4.5 25.2 1.0 CB A:LYS103 4.6 20.7 1.0 O A:HOH4599 4.6 46.2 1.0 O A:HOH4691 4.7 47.3 1.0 CA A:ARG104 4.7 14.9 1.0 O A:HOH4754 4.8 37.8 1.0 C A:ARG104 4.9 15.8 1.0

Sodium binding site 2 out of 2 in the Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Atomic Resolution Structure of Apo-Form of Rafe From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ C:Na4002 b:16.4 occ:1.00 O C:HOH5440 2.3 27.8 1.0 O C:HOH5348 2.3 27.9 1.0 O C:LYS103 2.3 15.0 0.5 O C:LYS103 2.4 14.5 0.5 O C:HOH5324 2.4 21.8 1.0 OE1 C:GLU335 2.4 21.9 1.0 OE2 C:GLU335 2.5 23.1 1.0 CD C:GLU335 2.8 22.8 1.0 C C:LYS103 3.5 14.8 0.5 C C:LYS103 3.6 14.2 0.5 O C:HOH5523 4.1 31.8 1.0 CG C:GLU335 4.3 20.2 1.0 OD1 C:ASN107 4.3 24.6 1.0 O C:VAL105 4.4 14.1 1.0 CA C:LYS103 4.4 13.9 0.5 CA C:LYS103 4.4 14.7 0.5 O C:HOH5390 4.5 26.8 1.0 N C:ARG104 4.5 12.5 1.0 CB C:LYS103 4.5 15.5 0.5 O C:HOH5285 4.5 25.6 1.0 CB C:LYS103 4.6 15.0 0.5 CA C:ARG104 4.6 12.0 1.0 O C:HOH5270 4.6 23.5 1.0 C C:ARG104 4.8 11.5 1.0 O C:HOH5410 4.8 30.0 1.0

N.G.Paterson, A.Riboldi-Tunnicliffe, T.J.Mitchell, N.W.Isaacs. High Resolution Crystal Structures of Rafe From Streptococcus Pneumoniae. To Be Published.