Atomistry » Sodium » PDB 2gum-2hti » 2hcm
Atomistry »
  Sodium »
    PDB 2gum-2hti »
      2hcm »

Sodium in PDB 2hcm: Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium

Protein crystallography data

The structure of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium, PDB code: 2hcm was solved by Y.Patskovsky, S.C.Almo, S.K.Burley, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.207, 53.207, 174.485, 90.00, 90.00, 120.00
R / Rfree (%) 15 / 19.6

Other elements in 2hcm:

The structure of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium also contains other interesting chemical elements:

Tungsten (W) 1 atom
Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium (pdb code 2hcm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium, PDB code: 2hcm:

Sodium binding site 1 out of 1 in 2hcm

Go back to Sodium Binding Sites List in 2hcm
Sodium binding site 1 out of 1 in the Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Putative Dual Specificity Phosphatase Complexed with Zinc Tungstate, New York Structural Genomics Consortium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na370

b:51.0
occ:1.00
O A:HOH443 2.5 38.9 1.0
OE1 A:GLN143 2.6 36.4 1.0
CD A:GLN143 3.6 34.8 1.0
O A:HOH460 3.8 50.3 1.0
CD1 A:TRP139 3.9 32.8 1.0
CA A:ALA140 4.0 25.0 1.0
NE2 A:GLN143 4.1 37.7 1.0
CB A:ALA140 4.2 24.4 1.0
N A:ALA140 4.2 25.9 1.0
C A:TRP139 4.6 23.2 1.0
NE1 A:TRP139 4.7 26.9 1.0
CG A:GLN143 4.8 24.6 1.0
CG A:TRP139 4.8 28.6 1.0
O A:TRP139 4.8 23.3 1.0
O A:LEU136 4.9 22.2 1.0

Reference:

S.C.Almo, J.B.Bonanno, J.M.Sauder, S.Emtage, T.P.Dilorenzo, V.Malashkevich, S.R.Wasserman, S.Swaminathan, S.Eswaramoorthy, R.Agarwal, D.Kumaran, M.Madegowda, S.Ragumani, Y.Patskovsky, J.Alvarado, U.A.Ramagopal, J.Faber-Barata, M.R.Chance, A.Sali, A.Fiser, Z.Y.Zhang, D.S.Lawrence, S.K.Burley. Structural Genomics of Protein Phosphatases. J.Struct.Funct.Genom. V. 8 121 2007.
ISSN: ISSN 1345-711X
PubMed: 18058037
DOI: 10.1007/S10969-007-9036-1
Page generated: Tue Dec 15 05:50:29 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy