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Sodium in PDB 2hc9: Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1)

Enzymatic activity of Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1)

All present enzymatic activity of Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1):
3.4.11.1;

Protein crystallography data

The structure of Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1), PDB code: 2hc9 was solved by C.Zhan, Y.Patskovsky, B.C.Wengerter, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo, S.K.Burley, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.85
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 131.309, 131.309, 126.344, 90.00, 90.00, 120.00
R / Rfree (%) 14.2 / 17.5

Other elements in 2hc9:

The structure of Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1) (pdb code 2hc9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1), PDB code: 2hc9:

Sodium binding site 1 out of 1 in 2hc9

Go back to Sodium Binding Sites List in 2hc9
Sodium binding site 1 out of 1 in the Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Caenorhabditis Elegans Leucine Aminopeptidase-Zinc Complex (LAP1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2001

b:73.8
occ:1.00
 O4 A:SO4902 2.3 67.3 1.0
O A:HOH2648 3.2 56.0 1.0
O3 A:SO4902 3.3 66.2 1.0
S A:SO4902 3.3 63.6 1.0
N A:GLY140 3.7 32.4 1.0
CA A:GLY140 3.8 30.0 1.0
O2 A:SO4902 4.0 68.0 1.0
NH2 A:ARG142 4.3 33.8 1.0
CB A:SER139 4.3 22.9 1.0
OG A:SER139 4.4 27.8 1.0
O1 A:SO4902 4.5 64.9 1.0
C A:SER139 4.6 30.9 1.0
CA A:SER139 5.0 29.8 1.0
O A:HOH2621 5.0 45.1 1.0

Reference:

C.Zhan, Y.Patskovsky, B.C.Wengerter, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo. Crystal Structure and Function of Caenorhabditis Elegans Leucine Aminopeptidase To Be Published.
Page generated: Mon Oct 7 02:45:29 2024

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