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Sodium in PDB 2gu1: Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae

Protein crystallography data

The structure of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae, PDB code: 2gu1 was solved by R.Sugadev, D.Kumaran, S.Swaminathan, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.24 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.382, 85.396, 53.404, 90.00, 112.96, 90.00
R / Rfree (%) 23 / 26.4

Other elements in 2gu1:

The structure of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae (pdb code 2gu1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae, PDB code: 2gu1:

Sodium binding site 1 out of 1 in 2gu1

Go back to Sodium Binding Sites List in 2gu1
Sodium binding site 1 out of 1 in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na363

b:63.5
occ:1.00
O A:HOH459 2.8 62.8 1.0
O A:HOH490 3.2 50.8 1.0
CB A:TYR29 4.1 27.9 1.0
CA A:TYR29 4.1 27.2 1.0
N A:TYR29 4.2 25.7 1.0
O A:HOH377 4.3 22.7 1.0
CD1 A:TYR29 4.3 34.5 1.0
O A:VAL27 4.5 21.8 1.0
CG A:TYR29 4.7 34.1 1.0
CB A:ALA23 4.8 26.8 1.0
CA A:ALA23 4.9 25.9 1.0
C A:PRO28 4.9 25.6 1.0

Reference:

S.Ragumani, D.Kumaran, S.K.Burley, S.Swaminathan. Crystal Structure of A Putative Lysostaphin Peptidase From Vibrio Cholerae. Proteins V. 72 1096 2008.
ISSN: ISSN 0887-3585
PubMed: 18498110
DOI: 10.1002/PROT.22095
Page generated: Tue Dec 15 05:50:08 2020

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