Sodium in PDB 2git: Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide

The structure of Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide, PDB code: 2git was solved by O.Y.Borbulevych, B.M.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	50.384, 62.709, 74.773, 82.00, 76.22, 78.18
R / Rfree (%)	18 / 21.9

The binding sites of Sodium atom in the Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide (pdb code 2git). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide, PDB code: 2git:

Sodium binding site 1 out of 1 in the Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Class I Mhc Hla-A2 in Complex with the Modified Htlv-1 Tax (Y5K- 4-[3-Indolyl]-Butyric Acid) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na816 b:25.6 occ:1.00 O B:HOH882 2.2 24.8 1.0 O B:HOH904 2.3 31.4 1.0 O B:LEU87 2.4 11.8 1.0 O B:HOH923 2.5 28.8 1.0 OD1 B:ASN83 2.6 12.8 1.0 O B:HIS84 2.7 5.4 1.0 CG B:ASN83 3.6 12.8 1.0 C B:LEU87 3.6 11.3 1.0 C B:HIS84 3.7 6.4 1.0 ND2 B:ASN83 3.8 13.9 1.0 N B:HIS84 4.2 7.5 1.0 CA B:VAL85 4.2 7.0 1.0 N B:LEU87 4.3 9.2 1.0 N B:VAL85 4.4 5.4 1.0 O B:VAL85 4.4 8.0 1.0 C B:VAL85 4.4 6.8 1.0 CA B:LEU87 4.4 10.4 1.0 C B:SER88 4.4 12.2 1.0 O B:SER88 4.5 12.7 1.0 N B:SER88 4.6 11.7 1.0 CA B:SER88 4.6 12.1 1.0 CB B:LEU87 4.6 10.2 1.0 CA B:HIS84 4.6 7.3 1.0 N B:GLN89 4.9 11.4 1.0 CB B:ASN83 4.9 8.5 1.0

S.J.Gagnon, O.Y.Borbulevych, R.L.Davis-Harrison, R.V.Turner, M.Damirjian, A.Wojnarowicz, W.E.Biddison, B.M.Baker. T Cell Receptor Recognition Via Cooperative Conformational Plasticity. J.Mol.Biol. V. 363 228 2006.
ISSN: ISSN 0022-2836
PubMed: 16962135
DOI: 10.1016/J.JMB.2006.08.045