Atomistry » Sodium » PDB 2gg3-2gu7 » 2gg7
Atomistry »
  Sodium »
    PDB 2gg3-2gu7 »
      2gg7 »

Sodium in PDB 2gg7: Novel Bacterial Methionine Aminopeptidase Inhibitors

Enzymatic activity of Novel Bacterial Methionine Aminopeptidase Inhibitors

All present enzymatic activity of Novel Bacterial Methionine Aminopeptidase Inhibitors:
3.4.11.18;

Protein crystallography data

The structure of Novel Bacterial Methionine Aminopeptidase Inhibitors, PDB code: 2gg7 was solved by A.G.Evdokimov, M.E.Pokross, R.L.Walter, M.Mekel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.98 / 1.12
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.123, 62.945, 52.743, 90.00, 109.01, 90.00
R / Rfree (%) 13.2 / 15.5

Other elements in 2gg7:

The structure of Novel Bacterial Methionine Aminopeptidase Inhibitors also contains other interesting chemical elements:

Cobalt (Co) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Novel Bacterial Methionine Aminopeptidase Inhibitors (pdb code 2gg7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Novel Bacterial Methionine Aminopeptidase Inhibitors, PDB code: 2gg7:

Sodium binding site 1 out of 1 in 2gg7

Go back to Sodium Binding Sites List in 2gg7
Sodium binding site 1 out of 1 in the Novel Bacterial Methionine Aminopeptidase Inhibitors


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Novel Bacterial Methionine Aminopeptidase Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na703

b:9.6
occ:1.00
O A:HOH793 2.2 10.6 1.0
O A:VAL76 2.3 9.9 1.0
O A:ASN74 2.3 9.5 1.0
O A:SER231 2.3 9.1 1.0
C A:ASN74 3.2 8.7 1.0
C A:SER231 3.3 8.6 1.0
C A:VAL76 3.4 9.0 1.0
N A:ASN74 3.5 8.7 1.0
O A:HOH705 3.7 10.0 1.0
CA A:ASN74 3.8 9.1 1.0
N A:SER231 3.8 9.4 1.0
C A:ILE73 3.9 8.7 1.0
CA A:SER231 3.9 9.0 1.0
CB A:SER231 3.9 9.4 1.0
N A:VAL76 4.0 9.6 1.0
O A:ILE73 4.1 9.2 1.0
CA A:VAL76 4.2 9.6 1.0
N A:GLU75 4.3 9.3 1.0
O A:SER72 4.3 9.1 1.0
N A:VAL77 4.3 9.1 1.0
C A:GLU75 4.4 9.8 1.0
N A:ALA232 4.4 8.1 1.0
O A:HOH708 4.5 10.2 1.0
C A:SER72 4.5 8.4 1.0
CA A:VAL77 4.5 9.6 1.0
CA A:ILE73 4.6 8.5 1.0
CA A:GLU75 4.6 9.5 1.0
N A:ILE73 4.6 8.8 1.0
OG A:SER231 4.6 9.7 1.0
CG1 A:ILE93 4.7 8.8 1.0
CD1 A:ILE93 4.7 9.7 1.0
CA A:ALA232 4.7 7.9 1.0
CB A:SER72 4.8 9.1 1.0
CE A:MET112 4.8 8.7 1.0
CB A:VAL76 4.8 9.5 1.0
O A:ILE93 4.9 8.8 1.0
O A:VAL77 5.0 9.8 1.0

Reference:

A.G.Evdokimov, M.Pokross, R.L.Walter, M.Mekel, B.L.Barnett, J.Amburgey, W.L.Seibel, S.J.Soper, J.F.Djung, N.Fairweather, C.Diven, V.Rastogi, L.Grinius, C.Klanke, R.Siehnel, T.Twinem, R.Andrews, A.Curnow. Serendipitous Discovery of Novel Bacterial Methionine Aminopeptidase Inhibitors. Proteins V. 66 538 2007.
ISSN: ISSN 0887-3585
PubMed: 17120228
DOI: 10.1002/PROT.21207
Page generated: Tue Dec 15 05:49:40 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy