Sodium in the structure of Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima At 2.25 A Resolution (pdb 2fm1)

The binding sites of Sodium atom in the structure of Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima At 2.25 A Resolution (pdb code 2fm1). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2fm1 structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 83.3-2.2 Space group P212121 a (A) 95.614 b (A) 100.405 c (A) 149.648 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 14.2 Rfree (%) 21.6 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2fm1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2fm1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Thr286, D: Asp287, D: Leu289, D: Lys290, D: Val291, D: Asn292, D: Hoh417, D: Hoh461, D: Hoh506, D: Hoh507, D: Hoh563, conact list: Atom Atom Distance (A) Na O D:Thr286 2.54 Na CB D:Thr286 4.16 Na OG1 D:Thr286 3.92 Na C D:Thr286 3.64 Na CA D:Thr286 4.52 Na O D:Asp287 4.53 Na N D:Asp287 4.50 Na C D:Asp287 4.61 Na CA D:Asp287 4.50 Na O D:Leu289 2.61 Na N D:Leu289 4.35 Na CB D:Leu289 4.48 Na C D:Leu289 3.66 Na CA D:Leu289 4.37 Na N D:Lys290 4.60 Na C D:Lys290 4.55 Na CA D:Lys290 4.82 Na O D:Val291 2.58 Na N D:Val291 3.98 Na C D:Val291 3.41 Na CA D:Val291 4.32 Na N D:Asn292 4.06 Na CA D:Asn292 4.22 Na O D:Hoh417 2.55 Na O D:Hoh461 2.41 Na O D:Hoh506 4.01 Na O D:Hoh507 4.05 Na O D:Hoh563 2.50 interactive model: