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Sodium in PDB 2fm1: Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution

Protein crystallography data

The structure of Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution, PDB code: 2fm1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 83.33 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.614, 100.405, 149.648, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 21.6

Other elements in 2fm1:

The structure of Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms
Calcium (Ca) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution (pdb code 2fm1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution, PDB code: 2fm1:

Sodium binding site 1 out of 1 in 2fm1

Go back to Sodium Binding Sites List in 2fm1
Sodium binding site 1 out of 1 in the Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of L-Allo-Threonine Aldolase (TM1744) From Thermotoga Maritima at 2.25 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na344

b:39.6
occ:1.00
O D:HOH461 2.4 37.5 1.0
O D:HOH563 2.5 51.5 1.0
O D:THR286 2.5 31.1 1.0
O D:HOH417 2.6 28.9 1.0
O D:VAL291 2.6 29.5 1.0
O D:LEU289 2.6 25.7 1.0
C D:VAL291 3.4 31.5 1.0
C D:THR286 3.6 29.5 1.0
C D:LEU289 3.7 29.0 1.0
OG1 D:THR286 3.9 22.4 1.0
N D:VAL291 4.0 29.9 1.0
O D:HOH506 4.0 42.9 1.0
O D:HOH507 4.1 38.7 1.0
N D:ASN292 4.1 30.4 1.0
CB D:THR286 4.2 28.6 1.0
CA D:ASN292 4.2 30.6 1.0
CA D:VAL291 4.3 29.6 1.0
N D:LEU289 4.3 29.3 1.0
CA D:LEU289 4.4 28.1 1.0
CB D:LEU289 4.5 27.2 1.0
N D:ASP287 4.5 31.9 1.0
CA D:ASP287 4.5 32.8 1.0
CA D:THR286 4.5 28.1 1.0
O D:ASP287 4.5 31.2 1.0
C D:LYS290 4.5 29.8 1.0
N D:LYS290 4.6 30.4 1.0
C D:ASP287 4.6 31.5 1.0
CA D:LYS290 4.8 30.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Oct 7 02:27:56 2024

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