Sodium in PDB 2flh: Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin

The structure of Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin, PDB code: 2flh was solved by O.Pasternak, G.D.Bujacz, M.M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.20
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	113.790, 113.790, 86.980, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 19

The binding sites of Sodium atom in the Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin (pdb code 2flh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin, PDB code: 2flh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin within 5.0Å range: probe atom residue distance (Å) B Occ B:Na802 b:26.0 occ:1.00 O B:ASP123 2.4 16.7 1.0 O B:HOH817 2.5 19.0 1.0 O B:ILE126 2.5 16.6 1.0 O B:HOH887 2.8 38.2 1.0 O B:HOH902 2.8 35.8 1.0 O B:HOH885 2.9 37.0 1.0 C B:ASP123 3.5 15.5 1.0 C B:ILE126 3.7 14.4 1.0 CA B:SER124 3.9 20.0 1.0 C B:SER124 4.0 17.7 1.0 N B:SER124 4.0 18.3 1.0 O B:SER124 4.1 24.1 1.0 N B:ILE126 4.2 15.1 1.0 O B:GLU128 4.2 21.0 1.0 CA B:ILE126 4.3 14.8 1.0 CD B:LYS129 4.4 41.0 1.0 N B:ASP123 4.6 15.8 1.0 CB B:HIS122 4.6 18.3 1.0 O B:GLU127 4.6 19.0 1.0 O B:HOH940 4.6 40.1 1.0 CG B:LYS129 4.6 35.6 1.0 CA B:ASP123 4.6 16.3 1.0 N B:ASP125 4.6 15.8 1.0 CB B:ILE126 4.7 14.2 1.0 N B:GLU127 4.7 15.1 1.0 CB B:LYS129 4.7 30.1 1.0 C B:GLU127 4.8 17.1 1.0 CA B:GLU127 4.8 17.4 1.0 O B:GLY94 4.9 17.1 1.0 CE B:LYS129 5.0 43.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Cytokinin-Specific Binding Protein From Mung Bean in Complex with Cytokinin within 5.0Å range: probe atom residue distance (Å) B Occ C:Na801 b:32.0 occ:1.00 O C:HOH969 2.4 18.8 0.5 O C:ILE126 2.6 19.8 1.0 O C:HOH858 2.7 32.8 1.0 O C:HOH873 2.9 41.2 1.0 O C:HOH969 2.9 27.2 0.5 O C:SER124 2.9 23.6 1.0 O C:HOH929 3.2 28.3 1.0 C C:ILE126 3.6 16.1 1.0 C C:SER124 3.6 21.8 1.0 O C:HOH886 3.9 44.9 1.0 CA C:SER124 4.0 23.1 1.0 O C:HOH975 4.1 38.6 0.5 CA C:GLU127 4.2 17.8 1.0 O C:ASP123 4.2 18.6 1.0 O C:GLU127 4.3 21.6 1.0 N C:GLU127 4.3 16.4 1.0 N C:ILE126 4.3 16.4 1.0 O C:HOH852 4.5 27.2 1.0 O C:HOH831 4.5 22.1 1.0 C C:GLU127 4.6 20.0 1.0 N C:ASP125 4.6 17.2 1.0 CA C:ILE126 4.6 15.5 1.0 C C:ASP125 4.6 17.1 1.0 O A:HOH756 4.7 40.4 1.0 CA C:ASP125 4.9 17.1 1.0 CB C:SER124 4.9 26.7 1.0

O.Pasternak, G.D.Bujacz, Y.Fujimoto, Y.Hashimoto, F.Jelen, J.Otlewski, M.M.Sikorski, M.Jaskolski. Crystal Structure of Vigna Radiata Cytokinin-Specific Binding Protein in Complex with Zeatin. Plant Cell V. 18 2622 2006.
ISSN: ISSN 1040-4651
PubMed: 16998071
DOI: 10.1105/TPC.105.037119