Sodium in PDB 2fjb: Adenosine-5'-Phosphosulfate Reductase Im Complex with Products

All present enzymatic activity of Adenosine-5'-Phosphosulfate Reductase Im Complex with Products:
1.8.99.2;

The structure of Adenosine-5'-Phosphosulfate Reductase Im Complex with Products, PDB code: 2fjb was solved by A.Schiffer, G.Fritz, P.M.Kroneck, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	72.600, 113.500, 193.900, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 19.2

The structure of Adenosine-5'-Phosphosulfate Reductase Im Complex with Products also contains other interesting chemical elements:

Iron

(Fe)

16 atoms

The binding sites of Sodium atom in the Adenosine-5'-Phosphosulfate Reductase Im Complex with Products (pdb code 2fjb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Adenosine-5'-Phosphosulfate Reductase Im Complex with Products, PDB code: 2fjb:

Sodium binding site 1 out of 1 in the Adenosine-5'-Phosphosulfate Reductase Im Complex with Products


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Adenosine-5'-Phosphosulfate Reductase Im Complex with Products within 5.0Å range: probe atom residue distance (Å) B Occ C:Na8000 b:33.7 occ:1.00 O C:HOH7282 2.4 40.9 1.0 N3 C:AMP1301 2.6 21.1 0.9 OH C:TYR2095 3.0 11.8 1.0 OE1 C:GLN2145 3.2 16.0 1.0 C2 C:AMP1301 3.4 24.4 0.9 O C:HOH5278 3.7 21.8 1.0 O2' C:AMP1301 3.7 24.7 0.9 C4 C:AMP1301 3.8 24.5 0.9 CZ C:TYR2095 3.8 10.1 1.0 C1' C:AMP1301 4.0 25.9 0.9 CE1 C:TYR2095 4.1 10.5 1.0 CD1 C:TRP2144 4.1 13.7 1.0 N9 C:AMP1301 4.1 24.8 0.9 O4' C:AMP1301 4.3 25.4 0.9 O C:HOH5856 4.3 41.0 1.0 C2' C:AMP1301 4.3 24.5 0.9 CD C:GLN2145 4.4 14.9 1.0 CD1 C:LEU2278 4.4 14.2 1.0 O C:HOH5013 4.5 12.6 1.0 CG C:PRO2311 4.5 19.1 1.0 O3' C:AMP1301 4.6 18.4 0.9 N1 C:AMP1301 4.7 23.9 0.9 NE2 C:GLN2145 4.8 12.6 1.0 O C:HOH7281 4.8 87.4 1.0 NE1 C:TRP2144 4.8 14.5 1.0 CE2 C:TYR2095 4.9 9.8 1.0 CD2 C:LEU2278 4.9 14.5 1.0

A.Schiffer, G.Fritz, P.M.Kroneck, U.Ermler. Reaction Mechanism of the Iron-Sulfur Flavoenzyme Adenosine-5'-Phosphosulfate Reductase Based on the Structural Characterization of Different Enzymatic States Biochemistry V. 45 2960 2006.
ISSN: ISSN 0006-2960
PubMed: 16503650
DOI: 10.1021/BI0521689