Sodium in PDB 2evr: Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution

The structure of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution, PDB code: 2evr was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.71 / 1.60
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.470, 90.470, 93.810, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 17.6

The structure of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution (pdb code 2evr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution, PDB code: 2evr:

Sodium binding site 1 out of 1 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (NPUN_R0659) From Nostoc Punctiforme Pcc 73102 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na236 b:38.9 occ:1.00 OE1 A:GLU99 2.2 48.9 1.0 CD A:GLU99 2.9 36.0 1.0 OE2 A:GLU99 2.9 51.9 1.0 O A:HOH523 3.7 20.7 0.5 O A:HOH404 4.3 43.8 1.0 CG A:GLU99 4.3 22.8 1.0 CB A:GLU99 4.9 17.4 1.0 CB A:ALA102 4.9 17.9 1.0

Q.Xu, S.Sudek, D.Mcmullan, M.D.Miller, B.Geierstanger, D.H.Jones, S.S.Krishna, G.Spraggon, B.Bursalay, P.Abdubek, C.Acosta, E.Ambing, T.Astakhova, H.L.Axelrod, D.Carlton, J.Caruthers, H.J.Chiu, T.Clayton, M.C.Deller, L.Duan, Y.Elias, M.A.Elsliger, J.Feuerhelm, S.K.Grzechnik, J.Hale, G.Won Han, J.Haugen, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, P.Kozbial, A.Kumar, D.Marciano, A.T.Morse, E.Nigoghossian, L.Okach, S.Oommachen, J.Paulsen, R.Reyes, C.L.Rife, C.V.Trout, H.Van Den Bedem, D.Weekes, A.White, G.Wolf, C.Zubieta, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Structural Basis of Murein Peptide Specificity of A Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase. Structure V. 17 303 2009.
ISSN: ISSN 0969-2126
PubMed: 19217401
DOI: 10.1016/J.STR.2008.12.008