Sodium in the structure of Crystal Structure of E. Coli. Methionine Amino Peptidase in Complex With 5-(2-(Trifluoromethyl)Phenyl)Furan-2- Carboxylic Acid (pdb 2evc)

The binding sites of Sodium atom in the structure of Crystal Structure of E. Coli. Methionine Amino Peptidase in Complex With 5-(2-(Trifluoromethyl)Phenyl)Furan-2- Carboxylic Acid (pdb code 2evc). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2evc structure was solved by W.-J.HUANG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.6 Space group P1211 a (A) 37.800 b (A) 60.200 c (A) 50.400 alpha (°) 90.00 beta (°) 104.50 gamma (°) 90.00 Rfactor (%) 21 Rfree (%) 22.9 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2evc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2evc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser72, A: Ile73, A: Asn74, A: Glu75, A: Val76, A: Val77, A: Ile93, A: Met112, A: Ser231, A: Ala232, A: Hoh1009, A: Hoh1012, A: Hoh1037, conact list: Atom Atom Distance (A) Na O A:Ser72 4.27 Na CB A:Ser72 4.71 Na C A:Ser72 4.50 Na O A:Ile73 4.00 Na N A:Ile73 4.62 Na C A:Ile73 3.81 Na CA A:Ile73 4.57 Na O A:Asn74 2.13 Na N A:Asn74 3.60 Na C A:Asn74 3.09 Na CA A:Asn74 3.67 Na O A:Glu75 4.91 Na N A:Glu75 4.15 Na C A:Glu75 4.24 Na CA A:Glu75 4.52 Na O A:Val76 2.35 Na N A:Val76 3.83 Na CB A:Val76 4.76 Na C A:Val76 3.45 Na CA A:Val76 4.24 Na N A:Val77 4.41 Na CA A:Val77 4.59 Na O A:Ile93 4.90 Na CD1 A:Ile93 4.70 Na CG1 A:Ile93 4.76 Na CE A:Met112 4.76 Na O A:Ser231 2.23 Na N A:Ser231 3.77 Na CB A:Ser231 3.86 Na OG A:Ser231 4.66 Na C A:Ser231 3.27 Na CA A:Ser231 3.84 Na N A:Ala232 4.38 Na CA A:Ala232 4.73 Na O A:Hoh1009 2.33 Na O A:Hoh1012 4.51 Na O A:Hoh1037 3.76 interactive model: