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Sodium in PDB 2ekb: Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M)

Protein crystallography data

The structure of Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M), PDB code: 2ekb was solved by Y.Asada, M.Taketa, Y.Tanaka, Y.Matsuura, N.Kunishima, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.47 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.138, 91.699, 110.870, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 23

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M) (pdb code 2ekb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M), PDB code: 2ekb:

Sodium binding site 1 out of 1 in 2ekb

Go back to Sodium Binding Sites List in 2ekb
Sodium binding site 1 out of 1 in the Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1201

b:14.6
occ:1.00
O B:ALA79 2.3 14.7 1.0
O B:GLU81 2.4 13.4 1.0
C B:ALA79 3.2 14.2 1.0
C B:GLU81 3.5 12.2 1.0
N B:GLU81 3.6 12.1 1.0
C B:LEU80 3.8 13.0 1.0
CA B:GLU81 4.0 11.1 1.0
CA B:ALA79 4.0 14.3 1.0
N B:LEU80 4.0 12.9 1.0
CA B:LEU80 4.2 13.1 1.0
CB B:GLU81 4.3 10.4 1.0
O B:GLY78 4.3 14.3 1.0
O B:LEU80 4.3 12.6 1.0
O B:HOH1339 4.4 47.8 1.0
N B:GLY82 4.6 11.1 1.0
N B:ALA83 4.8 13.6 1.0
CA B:GLY82 4.9 12.9 1.0
CB B:ALA79 5.0 14.9 1.0

Reference:

Y.Asada, M.Taketa, Y.Tanaka, Y.Matsuura, N.Kunishima. Structural Study of Project Id TTHB049 From Thermus Thermophilus HB8 (L19M) To Be Published.
Page generated: Tue Dec 15 05:48:33 2020

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