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Sodium in PDB 2ehs: Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)

Protein crystallography data

The structure of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1), PDB code: 2ehs was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.488, 36.970, 56.797, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 22.2

Other elements in 2ehs:

The structure of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) also contains other interesting chemical elements:

Zinc (Zn) 7 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) (pdb code 2ehs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1), PDB code: 2ehs:

Sodium binding site 1 out of 1 in 2ehs

Go back to Sodium Binding Sites List in 2ehs
Sodium binding site 1 out of 1 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:13.1
occ:1.00
O A:HOH319 2.0 28.4 1.0
OE2 A:GLU8 2.0 22.5 1.0
OE1 A:GLU12 2.1 26.7 1.0
O A:HOH210 2.2 18.4 1.0
CD A:GLU8 3.0 22.1 1.0
CD A:GLU12 3.2 22.7 1.0
CG A:GLU8 3.4 19.1 1.0
CG A:GLU12 3.8 20.3 1.0
CB A:GLU12 4.0 16.8 1.0
OE1 A:GLU8 4.1 25.4 1.0
ZN A:ZN202 4.1 24.1 1.0
OE2 A:GLU12 4.2 26.5 1.0
O A:HOH246 4.5 22.5 1.0
O A:GLU8 4.6 11.9 1.0
CB A:GLU8 4.9 15.7 1.0
O A:HOH226 4.9 18.3 1.0

Reference:

H.Mizutani, N.Kunishima. Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus To Be Published.
Page generated: Tue Dec 15 05:48:01 2020

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