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Sodium in PDB 2eh4: Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3

Enzymatic activity of Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3

All present enzymatic activity of Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3:
2.1.1.98;

Protein crystallography data

The structure of Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3, PDB code: 2eh4 was solved by K.Shimizu, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.74 / 2.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.694, 104.694, 139.996, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 23.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3 (pdb code 2eh4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3, PDB code: 2eh4:

Sodium binding site 1 out of 1 in 2eh4

Go back to Sodium Binding Sites List in 2eh4
Sodium binding site 1 out of 1 in the Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1302

b:26.0
occ:1.00
O A:HOH1308 2.3 26.9 1.0
O A:HOH1303 2.3 23.6 1.0
O B:HOH278 2.3 23.0 1.0
OH A:TYR117 2.4 22.6 1.0
O B:HOH268 2.5 20.1 1.0
CZ A:TYR117 3.4 22.4 1.0
CE2 A:TYR117 3.8 21.5 1.0
O B:GLY131 3.8 21.9 1.0
OG B:SER133 4.0 20.6 1.0
CD1 B:TYR117 4.1 22.4 1.0
CE1 B:TYR117 4.1 22.2 1.0
O A:PHE130 4.1 21.5 1.0
O A:ILE127 4.3 20.4 1.0
CB A:PHE130 4.3 19.9 1.0
O B:HOH284 4.3 24.7 1.0
CB B:PHE130 4.4 21.6 1.0
CE1 A:TYR117 4.4 21.8 1.0
O A:HOH1313 4.5 24.0 1.0
O B:HOH266 4.5 19.9 1.0
O B:HOH282 4.7 24.6 1.0
C A:PHE130 4.7 23.5 1.0
O B:PHE130 4.9 23.0 1.0
O A:GLY131 4.9 22.2 1.0
C B:GLY131 4.9 23.1 1.0

Reference:

K.Shimizu, Y.Matsuura, Y.Morikawa, H.Shimada, N.Kunishima. Mutant T146M Structure of PH0725 From Pyrococcus Horikoshii OT3 To Be Published.
Page generated: Tue Dec 15 05:48:00 2020

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