Atomistry » Sodium » PDB 2e54-2eka » 2ef0
Atomistry »
  Sodium »
    PDB 2e54-2eka »
      2ef0 »

Sodium in PDB 2ef0: Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus

Enzymatic activity of Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus:
2.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus, PDB code: 2ef0 was solved by P.Karthe, T.S.Kumarevel, S.Kuramitsu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.78 / 2.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 77.385, 77.385, 79.132, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 23.6

Other elements in 2ef0:

The structure of Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus (pdb code 2ef0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus, PDB code: 2ef0:

Sodium binding site 1 out of 1 in 2ef0

Go back to Sodium Binding Sites List in 2ef0
Sodium binding site 1 out of 1 in the Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:21.2
occ:0.50
NE2 A:HIS73 2.3 26.3 1.0
CD2 A:HIS73 3.2 25.2 1.0
CE1 A:HIS73 3.3 25.6 1.0
O A:HOH373 3.6 24.6 1.0
CG A:HIS73 4.3 23.4 1.0
ND1 A:HIS73 4.3 24.3 1.0

Reference:

P.Karthe, T.S.Kumarevel, S.Kuramitsu, S.Yokoyama. Crystal Structure of Ornithine Carbamoyltransferase From Thermus Thermophilus To Be Published.
Page generated: Tue Dec 15 05:47:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy