Sodium in PDB 2e7u: Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8:
5.4.3.8;

The structure of Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8, PDB code: 2e7u was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.90
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.674, 180.674, 117.700, 90.00, 90.00, 120.00
R / Rfree (%)	18 / 19.8

The binding sites of Sodium atom in the Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8 (pdb code 2e7u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8, PDB code: 2e7u:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:25.6 occ:1.00 O A:ASN211 2.2 24.7 1.0 O A:PHE399 2.3 21.3 1.0 O A:HOH1068 2.5 35.8 1.0 O A:HOH1230 2.6 43.7 1.0 C A:ASN211 3.2 24.9 1.0 OE2 A:GLU400 3.4 29.7 1.0 C A:PHE399 3.5 21.4 1.0 CB A:PHE399 3.6 22.6 1.0 CD A:GLU400 3.8 27.2 1.0 CA A:ASN211 3.8 25.0 1.0 O A:HOH1308 3.9 52.0 1.0 CA A:PHE399 4.2 20.3 1.0 O A:HOH1307 4.2 57.8 1.0 N A:ALA212 4.3 25.4 1.0 O A:HOH1233 4.3 48.5 1.0 CB A:ASN211 4.3 26.1 1.0 OE1 A:GLU400 4.3 26.0 1.0 CG A:GLU400 4.3 23.0 1.0 CA A:ALA212 4.5 25.8 1.0 N A:GLU400 4.6 21.1 1.0 O A:HOH1375 4.7 57.4 1.0 CA A:GLU400 4.8 22.3 1.0 OD1 A:ASN211 4.8 29.4 1.0 OG A:SER397 4.9 22.2 1.0 CG A:PHE399 4.9 22.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1003 b:27.8 occ:1.00 O A:LEU160 2.2 20.3 1.0 O A:HOH1053 2.4 25.2 1.0 O A:GLY158 2.4 21.2 1.0 O A:HOH1078 2.6 24.3 1.0 O A:HOH1210 2.7 31.2 1.0 O A:GLY156 2.8 26.2 1.0 C A:GLY156 3.3 27.1 1.0 C A:GLY158 3.4 21.4 1.0 C A:LEU160 3.4 21.5 1.0 N A:GLY156 3.7 27.1 1.0 CA A:GLY156 3.7 27.6 1.0 N A:GLY158 3.7 25.7 1.0 O A:HOH1059 3.8 32.1 1.0 N A:LEU160 4.0 20.8 1.0 CA A:GLY158 4.1 23.2 1.0 O A:HOH1105 4.2 29.6 1.0 N A:SER157 4.2 27.0 1.0 C A:ALA159 4.3 20.3 1.0 CA A:LEU160 4.3 21.6 1.0 C A:SER157 4.3 26.6 1.0 N A:ALA159 4.4 19.0 1.0 N A:THR161 4.4 21.7 1.0 CA A:THR161 4.4 22.2 1.0 O A:HOH1135 4.4 33.4 1.0 CA A:ALA159 4.7 20.1 1.0 CA A:SER157 4.7 27.3 1.0 O A:ALA159 4.7 23.0 1.0 C A:ALA155 4.8 26.4 1.0 CB A:LEU160 4.8 22.1 1.0 O A:LEU162 4.8 21.3 1.0 C A:THR161 4.9 22.7 1.0

H.Mizutani, N.Kunishima. Crystal Structure of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus HB8 To Be Published.