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Sodium in PDB 2e66: Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A

Protein crystallography data

The structure of Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A, PDB code: 2e66 was solved by B.Bagautdinov, M.Sawano, S.Bagautdinova, K.Yutani, N.Kunishima, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.88 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.191, 76.348, 103.488, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 25.3

Other elements in 2e66:

The structure of Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A (pdb code 2e66). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A, PDB code: 2e66:

Sodium binding site 1 out of 1 in 2e66

Go back to Sodium Binding Sites List in 2e66
Sodium binding site 1 out of 1 in the Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of CUTA1 From Pyrococcus Horikoshii OT3, Mutation D60A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1301

b:28.9
occ:1.00
O A:HOH1319 2.0 18.0 1.0
O B:HOH1207 2.0 22.2 1.0
O B:HOH1202 2.1 22.8 1.0
O A:HOH1316 2.2 28.3 1.0
O C:HOH121 2.2 24.1 1.0
O C:HOH146 2.3 26.4 1.0
O B:HOH1243 4.1 33.4 1.0
OD2 A:ASP86 4.1 19.5 1.0
O A:HOH1383 4.1 55.4 1.0
OD1 A:ASP86 4.1 20.2 1.0
OD1 B:ASP86 4.2 18.4 1.0
OD2 B:ASP86 4.2 16.1 1.0
OD2 C:ASP86 4.4 20.8 1.0
OD1 C:ASP86 4.5 19.8 1.0
O A:HOH1369 4.5 52.3 1.0
O A:ASP84 4.5 15.4 1.0
CG A:ASP86 4.5 18.9 1.0
O C:ASP84 4.6 19.5 1.0
CG B:ASP86 4.6 15.5 1.0
O B:ASP84 4.8 15.7 1.0
CG C:ASP86 4.9 19.4 1.0

Reference:

B.Bagautdinov, M.Sawano, S.Bagautdinova, K.Yutani, N.Kunishima. Structural Basis of the Hyper-Thermostability of CUTA1 To Be Published.
Page generated: Tue Dec 15 05:47:50 2020

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