Sodium in the structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus With Cl(-) Ions (pdb 2deh)

The binding sites of Sodium atom in the structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus With Cl(-) Ions (pdb code 2deh). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2deh structure was solved by E.INAGAKI, N.NAKANO, A.SHINKAI, S.YOKOYAMA, RIKEN STRUCTURALGENOMICS/PROTEOMICS INITIATIVE (RSGI), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 15.0-2.5 Space group P41212 a (A) 65.171 b (A) 65.171 c (A) 202.364 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 24.3 Rfree (%) 27.9 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2deh Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2deh. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu19, B: Glu19, C: Leu18, C: Glu19, conact list: Atom Atom Distance (A) Na OE1 A:Glu19 2.65 Na OE2 A:Glu19 2.49 Na CD A:Glu19 2.90 Na CG A:Glu19 4.42 Na OE1 B:Glu19 3.09 Na OE2 B:Glu19 3.19 Na CD B:Glu19 3.55 Na N C:Leu18 4.56 Na CB C:Leu18 4.53 Na CD1 C:Leu18 4.92 Na CG C:Leu18 4.90 Na N C:Glu19 4.60 Na OE1 C:Glu19 2.27 Na CB C:Glu19 4.98 Na OE2 C:Glu19 2.89 Na CD C:Glu19 2.93 Na CG C:Glu19 4.42 interactive model: