Sodium in PDB 2deg: Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions

The structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions, PDB code: 2deg was solved by E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.324, 65.324, 202.366, 90.00, 90.00, 90.00
R / Rfree (%)	23.6 / 27.9

The structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions also contains other interesting chemical elements:

Manganese

(Mn)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions (pdb code 2deg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions, PDB code: 2deg:

Sodium binding site 1 out of 1 in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with MN2(+) Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1001 b:55.0 occ:1.00 OE1 B:GLU9 2.2 41.5 1.0 O B:HOH2013 3.4 58.2 1.0 CD B:GLU9 3.5 37.4 1.0 CB B:GLU9 4.0 31.6 1.0 OE2 B:GLU9 4.3 38.8 1.0 CG B:GLU9 4.4 32.8 1.0

E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama. Crystal Structure of TT0972 Protein Form Thermus Thermophilus To Be Published.