Sodium in PDB 2dct: Crystal Structure of the TT1209 From Thermus Thermophilus HB8

The structure of Crystal Structure of the TT1209 From Thermus Thermophilus HB8, PDB code: 2dct was solved by Y.Asada, M.Sugahara, K.Shimizu, H.Yamamoto, H.Shimada, T.Nakamoto, N.Ono, N.Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.78 / 1.45
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.241, 62.241, 151.110, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 20.9

The structure of Crystal Structure of the TT1209 From Thermus Thermophilus HB8 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of the TT1209 From Thermus Thermophilus HB8 (pdb code 2dct). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the TT1209 From Thermus Thermophilus HB8, PDB code: 2dct:

Sodium binding site 1 out of 1 in the Crystal Structure of the TT1209 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the TT1209 From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:30.1 occ:1.00 O A:HOH1012 2.0 18.8 1.0 O A:VAL45 2.4 13.1 1.0 O A:HOH1017 2.5 20.3 1.0 O A:HOH1158 2.6 48.1 1.0 NE2 A:HIS44 2.9 21.4 1.0 CE1 A:HIS44 3.1 21.9 1.0 C A:VAL45 3.6 11.4 1.0 CD2 A:HIS44 3.6 21.0 1.0 O A:HOH1089 3.7 48.8 1.0 ND1 A:HIS44 3.7 22.2 1.0 N A:VAL45 3.9 10.8 1.0 CG A:HIS44 4.0 18.7 1.0 CA A:VAL45 4.2 11.1 1.0 OE1 A:GLU47 4.3 14.2 1.0 OE2 A:GLU47 4.3 16.6 1.0 O A:HOH1047 4.4 21.0 1.0 CB A:VAL45 4.4 11.2 1.0 CD A:GLU47 4.6 14.9 1.0 N A:HIS46 4.7 11.2 1.0 CA A:HIS46 5.0 11.4 1.0

Y.Asada, M.Sugahara, K.Shimizu, H.Yamamoto, H.Shimada, Y.Misumi, T.Nakamoto, N.Ono, N.Kunishima. Crystal Structure of the TT1209 From Thermus Thermophilus HB8 To Be Published.