Sodium in PDB 2d6b: Novel Bromate Species Trapped Within A Protein Crystal

All present enzymatic activity of Novel Bromate Species Trapped Within A Protein Crystal:
3.2.1.17;

The structure of Novel Bromate Species Trapped Within A Protein Crystal, PDB code: 2d6b was solved by J.Ondracek, J.R.Mesters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.25
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.210, 77.210, 38.191, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.3

The structure of Novel Bromate Species Trapped Within A Protein Crystal also contains other interesting chemical elements:

Bromine	(Br)	90 atoms
Chlorine	(Cl)	20 atoms

The binding sites of Sodium atom in the Novel Bromate Species Trapped Within A Protein Crystal (pdb code 2d6b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Novel Bromate Species Trapped Within A Protein Crystal, PDB code: 2d6b:

Sodium binding site 1 out of 1 in the Novel Bromate Species Trapped Within A Protein Crystal


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Novel Bromate Species Trapped Within A Protein Crystal within 5.0Å range: probe atom residue distance (Å) B Occ A:Na142 b:13.8 occ:1.00 O A:HOH1010 2.3 17.8 1.0 O A:SER60 2.4 13.9 1.0 O A:CYS64 2.4 12.7 1.0 O A:ARG73 2.4 15.2 1.0 OG A:SER72 2.5 16.0 1.0 O A:HOH1012 2.6 13.2 1.0 CB A:SER72 3.3 15.8 1.0 C A:CYS64 3.4 12.2 1.0 C A:SER60 3.5 14.2 1.0 C A:ARG73 3.5 13.3 1.0 CA A:ASN65 3.9 11.9 1.0 N A:ARG73 4.0 15.3 1.0 N A:ASN65 4.1 11.7 1.0 CA A:SER60 4.1 11.7 1.0 C A:SER72 4.2 16.0 1.0 O A:HOH1060 4.2 25.3 1.0 CB A:SER60 4.3 10.8 1.0 N A:ASN74 4.3 16.8 1.0 CA A:ARG73 4.4 15.9 1.0 CA A:SER72 4.4 15.8 1.0 O3 A:202132 4.4 14.5 0.7 N A:CYS64 4.4 13.0 1.0 O A:HOH1230 4.4 29.4 0.5 CA A:ASN74 4.5 15.0 1.0 CA A:CYS64 4.6 13.2 1.0 C A:ARG61 4.6 15.1 1.0 N A:ARG61 4.6 12.1 1.0 O1 A:202132 4.6 14.5 1.0 CB A:ASN74 4.6 16.6 1.0 N A:ASP66 4.6 11.5 1.0 OD1 A:ASN65 4.6 16.2 1.0 O A:ARG61 4.7 15.5 1.0 O A:SER72 4.7 16.9 1.0 CB A:THR69 4.8 12.3 1.0 C A:ASN65 4.8 10.3 1.0 N A:TRP62 4.8 14.9 1.0 CA A:ARG61 4.9 13.5 1.0 CB A:ASN65 4.9 14.0 1.0

J.Ondracek, J.R.Mesters. An Ensemble of Crystallographic Models Enables the Description of Novel Bromate-Oxoanion Species Trapped Within A Protein Crystal Acta Crystallogr.,Sect.D V. 62 996 2006.
ISSN: ISSN 0907-4449
PubMed: 16929100
DOI: 10.1107/S0907444906021627