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Sodium in the structure of Complex of Recombinant Human Thrombin With A Designed Inhibitor (pdb 2cn0)

The binding sites of Sodium atom in the structure of Complex of Recombinant Human Thrombin With A Designed Inhibitor (pdb code 2cn0). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 2cn0 structure was solved by A.HOFFMANN-RODER, E.SCHWEIZER, J.EGGER, P.SEILER, U.OBST-SANDER, B.WAGNER, M.KANSY, D.W.BANNER, F.DIEDERICH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)71.4-1.3
Space groupC121
a (A)70.640
b (A)71.410
c (A)72.520
alpha (°)90.00
beta (°)100.35
gamma (°)90.00
Rfactor (%)18.4
Rfree (%)20.4

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 2cn0

Sodium binding site 1 out of 1 in 2cn0
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 2cn0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2cn0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Tyr184A, H: Asp221, H: Arg221A, H: Asp222, H: Gly223, H: Lys224, H: Tyr225, H: Hoh2261, H: Hoh2262, H: Hoh2274, H: Hoh2275, H: Hoh2276, H: Hoh2302, H: Hoh2306, H: Hoh2310,

conact list:

AtomAtomDistance (A)
NaO H:Tyr184A4.13
NaO H:Asp2214.47
NaHA H:Asp2213.71
NaH H:Asp2214.96
NaOD1 H:Asp2214.66
NaC H:Asp2214.06
NaCA H:Asp2214.39
NaHB2 H:Arg221A4.82
NaN H:Arg221A3.90
NaC H:Arg221A3.34
NaCA H:Arg221A4.24
NaO H:Arg221A2.28
NaHA H:Arg221A4.95
NaH H:Arg221A3.99
NaN H:Asp2224.20
NaHA H:Asp2223.73
NaH H:Asp2224.97
NaC H:Asp2224.49
NaCA H:Asp2224.30
NaN H:Gly2234.22
NaH H:Gly2233.87
NaC H:Gly2234.83
NaHB2 H:Lys2243.87
NaN H:Lys2243.82
NaCB H:Lys2244.51
NaC H:Lys2243.39
NaCA H:Lys2244.11
NaO H:Lys2242.27
NaH H:Lys2243.22
NaN H:Tyr2254.43
NaHD1 H:Tyr2254.99
NaCA H:Tyr2254.74
NaHA H:Tyr2254.06
NaO H:Hoh22612.71
NaO H:Hoh22622.49
NaO H:Hoh22744.02
NaO H:Hoh22754.28
NaO H:Hoh22764.46
NaO H:Hoh23022.46
NaO H:Hoh23064.09
NaO H:Hoh23102.31

interactive model:

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