Sodium in the structure of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D-Hexose-6-Phosphate Mutarotase. (pdb 2ciq)

The binding sites of Sodium atom in the structure of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D-Hexose-6-Phosphate Mutarotase. (pdb code 2ciq). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2ciq structure was solved by M.GRAILLE, J.-P.BALTAZE, N.LEULLIOT, D.LIGER, S.QUEVILLON-CHERUEL, H.VAN TILBEURGH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 19.2-1.7 Space group P21212 a (A) 106.190 b (A) 44.800 c (A) 73.990 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18.7 Rfree (%) 21.9 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2ciq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2ciq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met248, A: Ala249, A: Asp250, A: Phe251, A: Glu252, A: Lys254, A: Hoh2265, A: Hoh2268, A: Hoh2269, conact list: Atom Atom Distance (A) Na O A:Met248 4.75 Na O A:Ala249 2.40 Na C A:Ala249 3.50 Na CB A:Ala249 4.80 Na CA A:Ala249 4.07 Na N A:Asp250 4.62 Na CA A:Asp250 4.94 Na O A:Phe251 4.80 Na OE1 A:Glu252 4.54 Na OE2 A:Glu252 2.38 Na CD A:Glu252 3.52 Na CG A:Glu252 4.05 Na CE A:Lys254 4.63 Na NZ A:Lys254 4.25 Na O A:Hoh2265 2.30 Na O A:Hoh2268 2.39 Na O A:Hoh2269 4.80 interactive model: