Atomistry » Sodium » PDB 2c8y-2cn0 » 2ccc
Atomistry »
  Sodium »
    PDB 2c8y-2cn0 »
      2ccc »

Sodium in PDB 2ccc: Complexes of Dodecin with Flavin and Flavin-Like Ligands

Protein crystallography data

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 2ccc was solved by M.Grininger, K.Zeth, D.Oesterhelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.7
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 142.850, 142.850, 142.850, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20.2

Other elements in 2ccc:

The structure of Complexes of Dodecin with Flavin and Flavin-Like Ligands also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Complexes of Dodecin with Flavin and Flavin-Like Ligands (pdb code 2ccc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Complexes of Dodecin with Flavin and Flavin-Like Ligands, PDB code: 2ccc:

Sodium binding site 1 out of 1 in 2ccc

Go back to Sodium Binding Sites List in 2ccc
Sodium binding site 1 out of 1 in the Complexes of Dodecin with Flavin and Flavin-Like Ligands


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Complexes of Dodecin with Flavin and Flavin-Like Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na103

b:14.5
occ:0.33
O A:HOH2071 2.3 14.9 1.0
CL A:CL104 2.8 15.9 0.3
O A:HOH2002 3.0 31.5 0.3
O A:HOH2006 4.2 18.0 1.0
CB A:LEU7 4.4 13.1 1.0
NE2 A:GLN59 4.7 14.9 1.0
OE1 A:GLN59 4.7 13.4 1.0
O A:LYS5 4.8 14.1 1.0
CD2 A:LEU7 4.9 12.2 1.0

Reference:

M.Grininger, K.Zeth, D.Oesterhelt. Dodecins: A Family of Lumichrome Binding Proteins. J.Mol.Biol. V. 357 842 2006.
ISSN: ISSN 0022-2836
PubMed: 16460756
DOI: 10.1016/J.JMB.2005.12.072
Page generated: Mon Oct 7 02:07:20 2024

Last articles

Mg in 9ESI
Mg in 9ESH
Mg in 9FMS
Mg in 9EXS
Mg in 9E6L
Mg in 9E6N
Mg in 9EPN
Mg in 9DTR
Mg in 9D89
Mg in 9D4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy