Atomistry » Sodium » PDB 2c8y-2cn0 » 2c9v
Atomistry »
  Sodium »
    PDB 2c8y-2cn0 »
      2c9v »

Sodium in PDB 2c9v: Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase

Enzymatic activity of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase

All present enzymatic activity of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase:
1.15.1.1;

Protein crystallography data

The structure of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase, PDB code: 2c9v was solved by R.W.Strange, S.V.Antonyuk, M.A.Hough, P.A.Doucette, J.S.Valentine, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.00 / 1.07
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.605, 67.368, 52.532, 90.00, 106.54, 90.00
R / Rfree (%) 13.1 / 15.8

Other elements in 2c9v:

The structure of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase also contains other interesting chemical elements:

Copper (Cu) 4 atoms
Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase (pdb code 2c9v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase, PDB code: 2c9v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2c9v

Go back to Sodium Binding Sites List in 2c9v
Sodium binding site 1 out of 2 in the Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na158

b:9.7
occ:1.00
O A:HOH2163 3.1 10.7 1.0
O A:HOH2144 3.2 11.5 1.0
O A:HOH2164 3.3 12.1 1.0
CD1 A:LEU126 3.7 12.9 1.0
CD A:PRO74 4.1 10.2 1.0
CG A:PRO74 4.2 11.6 1.0
CE A:LYS75 4.2 21.1 1.0
CD2 A:LEU126 4.5 10.9 1.0
O A:HOH2058 4.7 22.2 1.0
CG A:LEU126 4.7 10.4 1.0
NZ A:LYS75 4.9 22.3 1.0
O A:HOH2147 4.9 16.2 0.5

Sodium binding site 2 out of 2 in 2c9v

Go back to Sodium Binding Sites List in 2c9v
Sodium binding site 2 out of 2 in the Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Atomic Resolution Structure of Cu-Zn Human Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Na159

b:8.7
occ:1.00
O F:HOH2071 3.1 16.3 1.0
O F:HOH2169 3.1 10.5 1.0
O F:HOH2148 3.2 11.1 1.0
O F:HOH2168 3.3 11.1 1.0
CD1 F:LEU126 3.7 12.3 1.0
CD F:PRO74 4.1 9.3 1.0
CG F:PRO74 4.2 10.8 1.0
CD2 F:LEU126 4.5 10.6 1.0
CE F:LYS75 4.6 13.4 0.7
O F:HOH2063 4.7 17.8 1.0
CG F:LEU126 4.7 9.7 1.0
CD F:LYS75 4.8 12.4 0.7
NZ F:LYS75 4.9 14.6 0.7

Reference:

R.W.Strange, S.V.Antonyuk, M.A.Hough, P.A.Doucette, J.S.Valentine, S.S.Hasnain. Variable Metallation of Human Superoxide Dismutase: Atomic Resolution Crystal Structures of Cu-Zn, Zn-Zn and As-Isolated Wild-Type Enzymes. J.Mol.Biol. V. 356 1152 2006.
ISSN: ISSN 0022-2836
PubMed: 16406071
DOI: 10.1016/J.JMB.2005.11.081
Page generated: Tue Dec 15 05:46:43 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy