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Sodium in PDB 2b7r: Structure of E378D Mutant Flavocytochrome C3

Enzymatic activity of Structure of E378D Mutant Flavocytochrome C3

All present enzymatic activity of Structure of E378D Mutant Flavocytochrome C3:
1.3.99.1;

Protein crystallography data

The structure of Structure of E378D Mutant Flavocytochrome C3, PDB code: 2b7r was solved by K.L.Pankhurst, C.G.Mowat, E.L.Rothery, C.S.Miles, M.D.Walkinshaw, G.A.Reid, S.K.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.961, 92.879, 79.486, 90.00, 91.17, 90.00
R / Rfree (%) 15.6 / 18

Other elements in 2b7r:

The structure of Structure of E378D Mutant Flavocytochrome C3 also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of E378D Mutant Flavocytochrome C3 (pdb code 2b7r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of E378D Mutant Flavocytochrome C3, PDB code: 2b7r:

Sodium binding site 1 out of 1 in 2b7r

Go back to Sodium Binding Sites List in 2b7r
Sodium binding site 1 out of 1 in the Structure of E378D Mutant Flavocytochrome C3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of E378D Mutant Flavocytochrome C3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1810

b:8.4
occ:1.00
O A:HOH1865 2.4 8.1 1.0
O A:THR536 2.4 8.7 1.0
O A:GLU534 2.4 7.0 1.0
O A:THR506 2.5 8.1 1.0
O A:GLY508 2.5 7.9 1.0
O A:MET507 3.0 9.3 1.0
C A:MET507 3.2 8.6 1.0
C A:GLY508 3.4 8.9 1.0
O A:HOH1827 3.4 8.3 1.0
C A:GLU534 3.5 7.3 1.0
C A:THR536 3.5 9.8 1.0
C A:THR506 3.6 8.5 1.0
N A:GLY508 3.7 8.4 1.0
CA A:MET507 3.8 8.7 1.0
CA A:GLY508 4.0 8.4 1.0
CA A:GLU534 4.0 7.0 1.0
N A:THR536 4.1 8.6 1.0
O A:HOH1855 4.1 11.0 1.0
N A:MET507 4.2 8.1 1.0
CG A:GLU534 4.2 7.4 1.0
O A:HOH1848 4.2 11.4 1.0
N A:GLY509 4.4 9.0 1.0
C A:VAL535 4.4 8.0 1.0
CA A:THR536 4.4 9.0 1.0
N A:GLY537 4.5 9.5 1.0
N A:VAL535 4.5 7.3 1.0
CA A:GLY537 4.6 9.8 1.0
CB A:GLU534 4.7 6.9 1.0
CA A:GLY509 4.7 9.7 1.0
OG1 A:THR506 4.8 7.9 1.0
NE2 A:HIS505 4.8 7.9 1.0
O A:GLY533 4.8 7.2 1.0
O A:VAL535 4.8 8.1 1.0
CA A:VAL535 4.8 7.6 1.0
CA A:THR506 4.9 7.8 1.0

Reference:

K.L.Pankhurst, C.G.Mowat, E.L.Rothery, J.M.Hudson, A.K.Jones, C.S.Miles, M.D.Walkinshaw, F.A.Armstrong, G.A.Reid, S.K.Chapman. A Proton Delivery Pathway in the Soluble Fumarate Reductase From Shewanella Frigidimarina. J.Biol.Chem. V. 281 20589 2006.
ISSN: ISSN 0021-9258
PubMed: 16699170
DOI: 10.1074/JBC.M603077200
Page generated: Tue Dec 15 05:45:39 2020

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