Sodium in the structure of High Resolution Structure of Hiv-1 Pr With Ts-126 (pdb 2a1e)

The binding sites of Sodium atom in the structure of High Resolution Structure of Hiv-1 Pr With Ts-126 (pdb code 2a1e). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2a1e structure was solved by N.DEMITRI, S.GEREMIA, L.RANDACCIO, J.WUERGES, F.BENEDETTI, F.BERTI, F.DINON, P.CAMPANER, G.TELL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-1.3 Space group P21212 a (A) 57.269 b (A) 84.956 c (A) 46.061 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 15.6 Rfree (%) 20.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2a1e Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2a1e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Lys14, B: Glu65, B: Gly68, B: Gol304, B: Hoh467, conact list: Atom Atom Distance (A) Na HB2 B:Lys14 4.97 Na HZ3 B:Lys14 4.00 Na HZ3 B:Lys14 2.90 Na CD B:Lys14 4.30 Na CD B:Lys14 4.69 Na HE3 B:Lys14 4.56 Na HD2 B:Lys14 3.79 Na HD3 B:Lys14 3.88 Na HD3 B:Lys14 4.33 Na CE B:Lys14 3.82 Na HZ2 B:Lys14 3.12 Na HE2 B:Lys14 3.26 Na NZ B:Lys14 4.34 Na NZ B:Lys14 3.36 Na HZ1 B:Lys14 3.82 Na HZ1 B:Lys14 4.19 Na OE1 B:Glu65 3.73 Na OE2 B:Glu65 2.71 Na CD B:Glu65 3.51 Na CG B:Glu65 4.97 Na HA2 B:Gly68 4.88 Na O2 B:Gol304 3.33 Na C1 B:Gol304 4.27 Na O1 B:Gol304 4.03 Na C3 B:Gol304 4.75 Na C3 B:Gol304 4.79 Na O3 B:Gol304 4.45 Na C2 B:Gol304 3.87 Na O B:Hoh467 3.11 interactive model: