Sodium in PDB 1zvd: Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain

The structure of Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain, PDB code: 1zvd was solved by A.A.Ogunjimi, D.J.Briant, N.Pece-Barbara, C.Le Roy, G.M.Di Guglielmo, P.Kavsak, R.K.Rasmussen, B.T.Seet, F.Sicheri, J.L.Wrana, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.57 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.359, 70.509, 152.351, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 24.8

The binding sites of Sodium atom in the Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain (pdb code 1zvd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain, PDB code: 1zvd:

Sodium binding site 1 out of 1 in the Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na800 b:13.2 occ:1.00 OD1 A:ASN718 2.6 21.0 1.0 O A:THR715 2.6 23.3 1.0 O A:THR676 2.6 19.5 1.0 OH A:TYR443 2.7 31.5 1.0 O A:GLN690 3.0 25.3 1.0 CG A:ASN718 3.6 17.7 1.0 C A:THR676 3.6 20.9 1.0 CZ A:TYR443 3.7 32.0 1.0 CE1 A:TYR443 3.7 28.5 1.0 C A:THR715 3.8 23.5 1.0 CA A:THR676 3.9 19.8 1.0 ND2 A:ASN718 3.9 14.1 1.0 CB A:THR676 3.9 18.9 1.0 C A:GLN690 4.2 26.1 1.0 CA A:GLY691 4.3 23.7 1.0 O A:HOH133 4.5 31.2 1.0 CA A:THR715 4.6 23.4 1.0 N A:CYS716 4.7 24.1 1.0 N A:ASN718 4.7 19.0 1.0 CA A:CYS716 4.7 25.0 1.0 N A:GLY691 4.7 23.8 1.0 C A:CYS716 4.8 24.0 1.0 CB A:THR715 4.8 24.6 1.0 C A:GLY691 4.8 25.3 1.0 N A:GLY677 4.8 20.8 1.0 OG1 A:THR676 4.8 24.0 1.0 CB A:ASN718 4.8 17.6 1.0 O A:HOH101 4.9 45.7 1.0 CG2 A:THR676 4.9 16.1 1.0 O A:CYS716 4.9 24.5 1.0 CA A:ASN718 4.9 17.4 1.0 CE2 A:TYR443 5.0 30.3 1.0

A.A.Ogunjimi, D.J.Briant, N.Pece-Barbara, C.Le Roy, G.M.Di Guglielmo, P.Kavsak, R.K.Rasmussen, B.T.Seet, F.Sicheri, J.L.Wrana. Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring the E2 to the Hect Domain. Mol.Cell V. 19 297 2005.
ISSN: ISSN 1097-2765
PubMed: 16061177
DOI: 10.1016/J.MOLCEL.2005.06.028