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Sodium in PDB 1zob: Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion

Enzymatic activity of Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion

All present enzymatic activity of Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion:
4.1.1.64;

Protein crystallography data

The structure of Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion, PDB code: 1zob was solved by W.Liu, M.D.Toney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.75
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 150.553, 150.553, 84.703, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 27.7

Other elements in 1zob:

The structure of Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion (pdb code 1zob). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion, PDB code: 1zob:

Sodium binding site 1 out of 1 in 1zob

Go back to Sodium Binding Sites List in 1zob
Sodium binding site 1 out of 1 in the Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Dialkylglycine Decarboxylases Bound with Calcium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na435

b:28.1
occ:1.00
O A:ALA95 2.4 30.7 1.0
O A:THR98 2.4 28.2 1.0
O A:HOH500 2.5 47.5 1.0
O A:LEU102 2.6 37.8 1.0
O A:PRO99 2.8 32.0 1.0
OG1 A:THR98 2.9 25.6 1.0
C A:THR98 3.3 28.2 1.0
C A:PRO99 3.5 32.1 1.0
C A:ALA95 3.5 29.4 1.0
C A:LEU102 3.6 36.5 1.0
O A:HOH501 3.8 63.9 1.0
CA A:PRO100 3.9 34.7 1.0
CB A:THR98 3.9 28.1 1.0
N A:LEU102 3.9 38.5 1.0
CA A:THR98 4.0 27.9 1.0
N A:PRO100 4.0 33.8 1.0
CB A:LEU102 4.0 35.4 1.0
CA A:LEU102 4.1 37.1 1.0
N A:THR98 4.1 27.6 1.0
CA A:ALA95 4.1 28.1 1.0
N A:PRO99 4.2 29.4 1.0
N A:GLY101 4.3 37.5 1.0
C A:PRO100 4.4 36.2 1.0
CA A:PRO99 4.5 30.8 1.0
O A:HOH474 4.5 27.6 1.0
N A:ASN96 4.6 29.2 1.0
N A:ASP103 4.7 35.4 1.0
O A:LEU94 4.8 30.3 1.0
C A:GLY101 4.8 40.1 1.0
CB A:ALA95 4.9 27.0 1.0
OD1 A:ASP103 4.9 42.0 1.0
C A:ASN96 4.9 29.2 1.0
CA A:ASN96 4.9 28.2 1.0
CG A:LEU102 5.0 34.1 1.0

Reference:

W.Liu, M.D.Toney. Crystal Structures of Dialkylglycine Decarboxylase Bound with Cesium Ion and Calcium Ion To Be Published.
Page generated: Tue Dec 15 05:44:37 2020

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