Sodium in PDB 1zkp: 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease

The structure of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease, PDB code: 1zkp was solved by J.S.Brunzelle, G.Minasov, L.Shuvalova, F.R.Collart, W.F.Anderson, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.375, 91.190, 78.466, 90.00, 115.31, 90.00
R / Rfree (%)	14.7 / 18

The structure of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease also contains other interesting chemical elements:

Zinc	(Zn)	8 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease (pdb code 1zkp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease, PDB code: 1zkp:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease within 5.0Å range: probe atom residue distance (Å) B Occ A:Na247 b:26.3 occ:1.00 O A:HOH414 2.3 32.1 1.0 O A:HOH415 2.3 37.7 1.0 O A:HOH274 2.4 15.6 1.0 O A:HOH358 2.4 31.9 1.0 O A:HOH295 2.5 23.5 1.0 O A:HOH319 2.6 27.9 1.0 NH1 A:ARG30 3.9 20.9 1.0 O A:HOH413 4.0 42.8 1.0 O A:HOH416 4.1 31.4 1.0 O A:GLY28 4.2 17.7 1.0 OD1 A:ASP53 4.5 19.2 1.0 O A:ASP51 4.5 14.6 1.0 OD1 A:ASP51 4.5 22.2 1.0 OD2 A:ASP53 4.5 16.7 1.0 O A:HOH401 4.7 31.1 1.0 O A:HOH402 4.8 35.4 1.0 CA A:ASP51 4.8 14.9 1.0 CG A:ASP53 5.0 15.8 1.0

Sodium binding site 2 out of 4 in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease within 5.0Å range: probe atom residue distance (Å) B Occ B:Na248 b:25.5 occ:1.00 O B:HOH274 2.2 17.2 1.0 O B:HOH466 2.4 34.3 1.0 O B:HOH469 2.4 32.6 1.0 O B:HOH346 2.4 23.4 1.0 O B:HOH437 2.9 34.0 1.0 O B:HOH314 2.9 26.5 1.0 NA B:NA249 3.7 22.7 1.0 OD2 B:ASP53 3.9 19.7 1.0 NH1 B:ARG30 4.0 16.7 1.0 OD1 B:ASP53 4.1 17.0 1.0 O B:ASP51 4.3 13.7 1.0 O B:GLY28 4.4 15.6 1.0 CG B:ASP53 4.4 16.2 1.0 O B:HOH265 4.6 19.1 1.0 CA B:ASP51 4.7 13.9 1.0 O B:HOH551 4.7 41.0 1.0 OD1 B:ASP51 4.7 19.8 1.0 C B:ASP51 4.9 13.1 1.0

Sodium binding site 3 out of 4 in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease within 5.0Å range: probe atom residue distance (Å) B Occ B:Na249 b:22.7 occ:1.00 O B:HOH469 2.3 32.6 1.0 O B:HOH265 2.4 19.1 1.0 O B:HOH346 2.4 23.4 1.0 NA B:NA248 3.7 25.5 1.0 O B:HOH438 3.7 26.6 1.0 O B:HOH403 3.9 21.9 1.0 OD2 B:ASP53 4.3 19.7 1.0 O B:GLY28 4.5 15.6 1.0 OD1 B:ASP53 4.6 17.0 1.0 CG B:ASP53 4.7 16.2 1.0 O B:HOH274 4.7 17.2 1.0 O B:HOH588 5.0 40.4 1.0

Sodium binding site 4 out of 4 in the 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease within 5.0Å range: probe atom residue distance (Å) B Occ C:Na247 b:21.9 occ:1.00 O C:HOH388 2.4 26.4 1.0 O C:HOH439 2.4 29.4 1.0 O C:HOH315 2.4 22.1 1.0 O C:HOH265 2.4 14.7 1.0 O C:HOH327 2.4 25.2 1.0 O C:HOH270 2.5 21.9 1.0 O C:HOH502 3.3 30.9 1.0 NH1 C:ARG30 3.8 19.8 1.0 O C:HOH297 4.2 25.9 1.0 O C:GLY28 4.3 15.0 1.0 O C:HOH371 4.3 30.2 1.0 OD1 C:ASP53 4.4 18.6 1.0 O C:HOH403 4.4 27.1 1.0 O C:ASP51 4.5 14.6 1.0 O C:HOH390 4.5 27.3 1.0 OD2 C:ASP53 4.5 16.3 1.0 OD1 C:ASP51 4.5 18.8 1.0 O C:HOH427 4.6 32.3 1.0 CA C:ASP51 4.9 14.9 1.0 CG C:ASP53 4.9 15.2 1.0

J.S.Brunzelle, G.Minasov, L.Shuvalova, F.R.Collart, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). 1.5A Resolution Crystal Structure of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease To Be Published.