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Sodium in PDB 1zko: Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution

Protein crystallography data

The structure of Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution, PDB code: 1zko was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.53 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.950, 65.249, 69.140, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 27

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution (pdb code 1zko). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution, PDB code: 1zko:

Sodium binding site 1 out of 1 in 1zko

Go back to Sodium Binding Sites List in 1zko
Sodium binding site 1 out of 1 in the Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glycine Cleavage System H Protein (TM0212) From Thermotoga Maritima at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na125

b:11.4
occ:1.00
O A:HOH135 3.1 17.7 1.0
NZ A:LYS5 3.3 18.4 1.0
O A:HOH204 3.5 35.9 1.0
CB A:ASP113 3.7 12.5 1.0
CE A:LYS5 3.9 21.8 1.0
O A:LYS4 4.5 14.2 1.0
SE A:MSE3 4.5 13.3 0.7
CD A:LYS5 4.6 20.2 1.0
CA A:ASP113 4.6 13.9 1.0
CG A:MSE3 4.6 17.9 1.0
OD2 A:ASP113 4.7 17.9 1.0
CG A:ASP113 4.7 17.2 1.0
CB A:MSE3 4.8 12.7 1.0
O A:HOH215 4.9 38.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Dec 15 05:44:33 2020

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