Sodium in PDB 1zf4: Atc Four-Stranded Dna Holliday Junction

The structure of Atc Four-Stranded Dna Holliday Junction, PDB code: 1zf4 was solved by F.A.Hays, A.T.Teegarden, Z.J.R.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.70 / 1.65
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	64.936, 24.034, 40.286, 90.00, 118.69, 90.00
R / Rfree (%)	23.1 / 27.5

The binding sites of Sodium atom in the Atc Four-Stranded Dna Holliday Junction (pdb code 1zf4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Atc Four-Stranded Dna Holliday Junction, PDB code: 1zf4:

Sodium binding site 1 out of 1 in the Atc Four-Stranded Dna Holliday Junction


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atc Four-Stranded Dna Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:Na68 b:8.5 occ:0.50 OP2 A:DA6 2.7 5.1 1.0 O5' A:DA6 3.2 5.5 1.0 C2' A:DA6 3.5 3.4 1.0 P A:DA6 3.5 6.1 1.0 C8 A:DA6 3.5 2.0 1.0 C3' A:DA6 4.1 3.9 1.0 O3' A:DT5 4.1 5.4 1.0 C7 A:DT7 4.2 3.1 1.0 N9 A:DA6 4.3 2.0 1.0 C1' A:DA6 4.4 2.0 1.0 C5' A:DA6 4.4 5.7 1.0 N7 A:DA6 4.4 2.0 1.0 O A:HOH102 4.6 13.7 1.0 C4' A:DA6 4.7 2.4 1.0 OP1 A:DA6 4.8 7.1 1.0 O4' A:DA6 4.8 2.0 1.0

F.A.Hays, A.Teegarden, Z.J.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho. How Sequence Defines Structure: A Crystallographic Map of Dna Structure and Conformation. Proc.Natl.Acad.Sci.Usa V. 102 7157 2005.
ISSN: ISSN 0027-8424
PubMed: 15870206
DOI: 10.1073/PNAS.0409455102