Atomistry » Sodium » PDB 1z2u-1zud » 1zew
Atomistry »
  Sodium »
    PDB 1z2u-1zud »
      1zew »

Sodium in PDB 1zew: B-Dna

Protein crystallography data

The structure of B-Dna, PDB code: 1zew was solved by F.A.Hays, A.T.Teegarden, Z.J.R.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.12 / 2.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.710, 24.556, 40.631, 90.00, 122.59, 90.00
R / Rfree (%) 24.4 / 27.3

Sodium Binding Sites:

The binding sites of Sodium atom in the B-Dna (pdb code 1zew). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the B-Dna, PDB code: 1zew:

Sodium binding site 1 out of 1 in 1zew

Go back to Sodium Binding Sites List in 1zew
Sodium binding site 1 out of 1 in the B-Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of B-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na21

b:1.0
occ:0.50
O B:HOH82 4.6 25.9 1.0
OP2 B:DA16 4.6 20.2 1.0
N7 B:DA16 4.7 18.6 1.0
C8 B:DA16 5.0 18.6 1.0

Reference:

F.A.Hays, A.Teegarden, Z.J.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho. How Sequence Defines Structure: A Crystallographic Map of Dna Structure and Conformation. Proc.Natl.Acad.Sci.Usa V. 102 7157 2005.
ISSN: ISSN 0027-8424
PubMed: 15870206
DOI: 10.1073/PNAS.0409455102
Page generated: Mon Oct 7 01:41:28 2024

Last articles

Cl in 5F4Q
Cl in 5F60
Cl in 5F5P
Cl in 5F53
Cl in 5F4U
Cl in 5F4S
Cl in 5F4R
Cl in 5F4P
Cl in 5F4L
Cl in 5F4B
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy