Sodium in PDB 1z67: Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri

The structure of Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri, PDB code: 1z67 was solved by J.Osipiuk, N.Maltseva, I.Dementieva, S.Clancy, F.Collart, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.45
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	57.476, 40.479, 48.333, 90.00, 93.78, 90.00
R / Rfree (%)	16.2 / 20.8

The binding sites of Sodium atom in the Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri (pdb code 1z67). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri, PDB code: 1z67:

Sodium binding site 1 out of 1 in the Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Homeodomain-Like Protein of Unknown Function S4005 From Shigella Flexneri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:48.3 occ:1.00 OD1 A:ASP77 2.4 21.3 1.0 OG A:SER76 2.6 18.1 0.4 OD1 A:ASN73 2.6 24.1 0.4 O A:HOH303 2.7 43.8 1.0 OE1 A:GLN80 2.9 26.6 0.5 O A:ASN73 3.3 20.0 1.0 OG A:SER76 3.5 20.7 0.6 CG A:ASP77 3.6 19.0 1.0 CG A:ASN73 3.6 21.4 0.4 N A:ASP77 3.7 17.4 1.0 CB A:SER76 3.7 17.9 0.6 CB A:SER76 3.8 17.7 0.4 CD A:GLN80 3.9 26.3 0.5 C A:SER76 4.0 17.9 1.0 NE2 A:GLN80 4.1 26.4 0.5 CA A:ASP77 4.1 18.0 1.0 C A:ASN73 4.1 19.6 1.0 CA A:ASN73 4.2 19.4 1.0 OD2 A:ASP77 4.3 21.0 1.0 ND2 A:ASN73 4.4 21.5 0.4 NE2 A:GLN80 4.4 28.4 0.5 CB A:ASP77 4.4 16.9 1.0 CA A:SER76 4.5 17.6 1.0 CB A:ASN73 4.5 20.3 0.4 CB A:ASN73 4.5 20.2 0.6 O A:SER76 4.5 18.3 1.0 CG A:ASN73 4.9 20.1 0.6 CD A:GLN80 5.0 26.5 0.5 OD1 A:ASN73 5.0 22.4 0.6

J.Osipiuk, N.Maltseva, I.Dementieva, S.Clancy, F.Collart, A.Joachimiak. Structure of Yidb Protein From Shigella Flexneri Shows A New Fold with Homeodomain Motif. Proteins V. 65 509 2006.
ISSN: ISSN 0887-3585
PubMed: 16927377
DOI: 10.1002/PROT.21054