Sodium in the structure of The Crystal Structure of A Dgd Mutant: Q52A (pdb 1z3z)

The binding sites of Sodium atom in the structure of The Crystal Structure of A Dgd Mutant: Q52A (pdb code 1z3z). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1z3z structure was solved by E.J.FOGLE, W.LIU, M.D.TONEY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-2.9 Space group P6422 a (A) 150.040 b (A) 150.040 c (A) 84.420 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 20.9 Rfree (%) 26.6 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1z3z Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1z3z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Leu94, A: Ala95, A: Asn96, A: Thr98, A: Pro99, A: Pro100, A: Gly101, A: Leu102, A: Asp103, A: Hoh464, conact list: Atom Atom Distance (A) Na O A:Leu94 4.88 Na O A:Ala95 2.54 Na C A:Ala95 3.73 Na CA A:Ala95 4.49 Na O A:Asn96 4.91 Na N A:Asn96 4.75 Na C A:Asn96 4.92 Na CA A:Asn96 4.91 Na O A:Thr98 2.54 Na N A:Thr98 4.40 Na CB A:Thr98 4.19 Na OG1 A:Thr98 3.26 Na C A:Thr98 3.33 Na CA A:Thr98 4.20 Na O A:Pro99 2.44 Na N A:Pro99 4.01 Na C A:Pro99 3.21 Na CA A:Pro99 4.13 Na N A:Pro100 3.83 Na CD A:Pro100 4.99 Na C A:Pro100 4.34 Na CA A:Pro100 3.81 Na N A:Gly101 4.35 Na O A:Leu102 2.69 Na N A:Leu102 4.02 Na CB A:Leu102 4.17 Na C A:Leu102 3.75 Na CA A:Leu102 4.24 Na N A:Asp103 4.89 Na OD1 A:Asp103 4.77 Na O A:Hoh464 3.17 interactive model: