Sodium in the structure of Manganese Peroxidase Complexed With Cd(II) Inhibitor (pdb 1yyg)

The binding sites of Sodium atom in the structure of Manganese Peroxidase Complexed With Cd(II) Inhibitor (pdb code 1yyg). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1yyg structure was solved by M.SUNDARAMOORTHY, H.L.YOUNGS, M.H.GOLD, T.L.POULOS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 8.0-1.6 Space group C121 a (A) 160.352 b (A) 45.259 c (A) 52.714 alpha (°) 90.00 beta (°) 97.21 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) 22.5 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1yyg Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1yyg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn76, A: Asp84, A: Ala357, A: Hoh1056, A: Hoh1268, A: Hoh1350, A: Hoh1368, A: Hoh1507, A: Hoh1521, A: Hoh1547, conact list: Atom Atom Distance (A) Na ND2 A:Asn76 4.16 Na CB A:Asp84 3.45 Na OD2 A:Asp84 4.54 Na OD1 A:Asp84 2.52 Na CG A:Asp84 3.36 Na CA A:Asp84 4.96 Na O A:Ala357 3.06 Na C A:Ala357 2.94 Na CA A:Ala357 4.39 Na OXT A:Ala357 2.18 Na O A:Hoh1056 4.72 Na O A:Hoh1268 4.50 Na O A:Hoh1350 4.82 Na O A:Hoh1368 4.14 Na O A:Hoh1507 2.90 Na O A:Hoh1521 4.81 Na O A:Hoh1547 4.40 interactive model: