Atomistry » Sodium » PDB 1y5y-1z1q » 1yan
Atomistry »
  Sodium »
    PDB 1y5y-1z1q »
      1yan »

Sodium in PDB 1yan: Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants

Enzymatic activity of Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants

All present enzymatic activity of Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants:
3.2.1.17;

Protein crystallography data

The structure of Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants, PDB code: 1yan was solved by Y.Yamagata, H.Kaneda, S.Fujii, K.Takano, K.Ogasahara, E.Kanaya, M.Kikuchi, M.Oobatake, K.Yutani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.508, 61.262, 33.748, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants (pdb code 1yan). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants, PDB code: 1yan:

Sodium binding site 1 out of 1 in 1yan

Go back to Sodium Binding Sites List in 1yan
Sodium binding site 1 out of 1 in the Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:25.6
occ:1.00
 O A:CYS65 2.2 12.8 1.0
O A:SER61 2.2 15.2 1.0
O A:VAL74 2.2 20.4 1.0
O A:HOH243 2.2 23.7 1.0
O A:HOH339 2.7 15.2 1.0
H2 A:HOH243 2.9 35.0 1.0
H1 A:HOH243 3.0 35.0 1.0
H1 A:HOH339 3.2 35.0 1.0
C A:CYS65 3.2 13.3 1.0
H2 A:HOH339 3.2 35.0 1.0
C A:VAL74 3.3 22.2 1.0
C A:SER61 3.4 14.0 1.0
CB A:ALA73 3.4 23.7 1.0
H A:VAL74 3.6 15.0 1.0
CA A:ASN66 3.7 13.0 1.0
H A:CYS65 3.7 25.0 1.0
N A:VAL74 3.8 23.8 1.0
N A:ASN66 3.9 11.3 1.0
H A:ASP67 3.9 25.0 1.0
N A:CYS65 4.1 14.0 1.0
C A:ARG62 4.1 18.9 1.0
N A:ASN75 4.2 21.1 1.0
CA A:VAL74 4.2 23.4 1.0
CA A:SER61 4.2 14.2 1.0
C A:ALA73 4.2 24.6 1.0
O A:ARG62 4.2 19.3 1.0
CA A:ASN75 4.3 19.0 1.0
CA A:CYS65 4.3 12.8 1.0
H1 A:HOH143 4.3 35.0 1.0
N A:ARG62 4.4 15.8 1.0
N A:TYR63 4.4 18.4 1.0
CA A:ALA73 4.4 23.6 1.0
CA A:ARG62 4.4 18.2 1.0
OD1 A:ASN66 4.4 14.2 1.0
CB A:ASN75 4.5 18.8 1.0
O A:HOH143 4.5 16.6 1.0
CB A:ASN66 4.5 12.5 1.0
CB A:SER61 4.6 12.5 1.0
H A:TYR63 4.6 25.0 1.0
N A:ASP67 4.7 11.1 1.0
C A:ASN66 4.7 11.5 1.0
C A:TYR63 4.8 16.8 1.0
H A:ASN66 4.8 25.0 1.0
N A:TRP64 4.8 13.6 1.0
CA A:TYR63 4.9 18.4 1.0
H A:TRP64 4.9 25.0 1.0
O A:ALA73 4.9 23.1 1.0
CG A:ASN66 5.0 14.5 1.0

Reference:

K.Takano, K.Ogasahara, H.Kaneda, Y.Yamagata, S.Fujii, E.Kanaya, M.Kikuchi, M.Oobatake, K.Yutani. Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants. J.Mol.Biol. V. 254 62 1995.
ISSN: ISSN 0022-2836
PubMed: 7473760
DOI: 10.1006/JMBI.1995.0599
Page generated: Mon Oct 7 00:38:47 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy