Sodium in PDB 1x0a: Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8:
1.1.1.27;

The structure of Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8, PDB code: 1x0a was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	163.250, 163.250, 163.250, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 19.9

The binding sites of Sodium atom in the Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8 (pdb code 1x0a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8, PDB code: 1x0a:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:21.0 occ:0.33 O A:HOH423 2.3 38.3 1.0 O A:HOH454 3.8 38.2 1.0 OE2 A:GLU57 4.3 35.9 1.0 NA A:NA404 4.9 14.1 0.3

Sodium binding site 2 out of 3 in the Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:53.4 occ:1.00 O A:ASP172 2.3 33.2 1.0 O A:HOH522 2.4 43.6 1.0 O A:HOH516 2.5 48.4 1.0 O A:HOH493 2.7 42.1 1.0 C A:ASP172 3.4 33.0 1.0 CB A:ASP172 3.6 37.8 1.0 O A:HOH640 3.9 53.6 1.0 CA A:ASP172 3.9 33.9 1.0 OD2 A:ASP172 3.9 43.8 1.0 N A:ASP172 4.0 33.9 1.0 O A:HOH575 4.1 47.8 1.0 CG A:ASP172 4.3 41.1 1.0 O A:HOH447 4.4 31.6 1.0 O A:HOH440 4.5 36.2 1.0 N A:LEU173 4.6 29.1 1.0 OE2 A:GLU307 4.6 38.9 1.0 O2 A:FMT401 4.8 31.6 1.0 CA A:LEU173 4.9 27.1 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:14.1 occ:0.33 O A:HOH619 2.2 10.5 0.3 OE2 A:GLU57 2.3 35.9 1.0 CD A:GLU57 3.3 35.3 1.0 CG A:GLU57 3.6 33.2 1.0 O A:GLU57 3.8 32.5 1.0 O A:HOH423 4.2 38.3 1.0 OE1 A:GLU57 4.4 34.2 1.0 C A:GLU57 4.5 32.6 1.0 O A:HOH626 4.6 17.4 0.3 NH2 A:ARG335 4.8 44.3 1.0 CB A:GLU57 4.9 31.1 1.0 NA A:NA402 4.9 21.0 0.3

H.Mizutani, N.Kunishima. Crystal Structure of Type II Malate/Lactate Dehydrogenase From Thermus Thermophilus HB8 To Be Published.