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Sodium in PDB 1wx1: Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8:
2.4.2.21;

Protein crystallography data

The structure of Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8, PDB code: 1wx1 was solved by Y.Asada, N.Kunishima, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.68 / 1.97
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.357, 107.357, 244.665, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8 (pdb code 1wx1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8, PDB code: 1wx1:

Sodium binding site 1 out of 1 in 1wx1

Go back to Sodium Binding Sites List in 1wx1
Sodium binding site 1 out of 1 in the Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1001

b:26.0
occ:1.00
 O A:GLN127 2.5 18.9 1.0
O A:HOH1045 2.7 28.9 1.0
O A:HOH1034 2.7 33.0 1.0
O A:HOH1057 2.8 32.9 1.0
C A:GLN127 3.5 19.2 1.0
CB A:GLN127 3.9 18.3 1.0
O A:HOH1022 4.1 21.3 1.0
CA A:GLN127 4.2 18.9 1.0
O A:HOH1244 4.3 51.0 1.0
N A:GLY128 4.5 17.9 1.0
CA A:GLY128 4.7 18.1 1.0
O A:HOH1100 4.7 34.7 1.0
O A:HOH1042 4.8 21.3 1.0
OE1 A:GLN127 4.8 20.7 1.0
O A:HOH1157 4.9 30.2 1.0

Reference:

Y.Asada, N.Kunishima. Crystal Structure of Nictinate-Nucleotide-Dimethylbenzimidazole Phosphoribosyltransferase From Thermus Thermophilus HB8 To Be Published.
Page generated: Tue Dec 15 05:41:24 2020

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