Sodium in PDB 1v4s: Crystal Structure of Human Glucokinase

All present enzymatic activity of Crystal Structure of Human Glucokinase:
2.7.1.1;

The structure of Crystal Structure of Human Glucokinase, PDB code: 1v4s was solved by K.Kamata, M.Mitsuya, T.Nishimura, J.Eiki, Y.Nagata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.42 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	79.855, 79.855, 322.221, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The structure of Crystal Structure of Human Glucokinase also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Human Glucokinase (pdb code 1v4s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Glucokinase, PDB code: 1v4s:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Glucokinase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Glucokinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na600 b:48.8 occ:1.00 O A:VAL244 2.3 40.3 1.0 O A:HOH739 2.4 31.6 1.0 O A:GLY246 2.4 46.4 1.0 O A:VAL241 2.4 35.4 1.0 O A:MET238 2.5 34.4 1.0 C A:VAL241 3.3 34.2 1.0 C A:VAL244 3.5 40.1 1.0 C A:GLY246 3.6 46.1 1.0 C A:MET238 3.6 36.7 1.0 CE A:MET238 3.9 44.9 1.0 N A:GLY246 3.9 42.0 1.0 CA A:VAL241 4.1 31.9 1.0 CB A:VAL241 4.1 29.6 1.0 OD2 A:ASP247 4.1 59.6 1.0 N A:GLU242 4.1 33.7 1.0 N A:VAL241 4.1 33.0 1.0 C A:GLU245 4.1 41.8 1.0 CA A:GLY246 4.3 43.6 1.0 CA A:GLU242 4.3 34.0 1.0 N A:VAL244 4.4 37.8 1.0 CA A:VAL244 4.4 37.9 1.0 N A:GLU245 4.4 42.9 1.0 CA A:MET238 4.5 38.1 1.0 CA A:GLU245 4.5 43.1 1.0 N A:GLN239 4.5 36.0 1.0 CA A:GLN239 4.5 36.9 1.0 CB A:VAL244 4.5 37.1 1.0 O A:GLU245 4.6 42.7 1.0 C A:GLN239 4.6 35.8 1.0 N A:ASP247 4.6 47.9 1.0 SD A:MET238 4.7 43.4 1.0 CB A:MET238 4.7 39.2 1.0 C A:GLU242 4.7 34.7 1.0 CG1 A:VAL241 4.8 31.1 1.0 O A:GLN239 4.8 37.5 1.0 CA A:ASP247 4.9 49.4 1.0

K.Kamata, M.Mitsuya, T.Nishimura, J.Eiki, Y.Nagata. Structural Basis For Allosteric Regulation of the Monomeric Allosteric Enzyme Human Glucokinase Structure V. 12 429 2004.
ISSN: ISSN 0969-2126
PubMed: 15016359
DOI: 10.1016/J.STR.2004.02.005