Atomistry » Sodium » PDB 1ubs-1v54 » 1uyp
Atomistry »
  Sodium »
    PDB 1ubs-1v54 »
      1uyp »

Sodium in PDB 1uyp: The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima

Enzymatic activity of The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima

All present enzymatic activity of The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima:
3.2.1.26;

Protein crystallography data

The structure of The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima, PDB code: 1uyp was solved by F.Alberto, C.Bignon, G.Sulzenbacher, B.Henrissat, M.Czjzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 129.10 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.480, 114.670, 130.030, 90.00, 98.96, 90.00
R / Rfree (%) 17.7 / 22

Sodium Binding Sites:

The binding sites of Sodium atom in the The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima (pdb code 1uyp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima, PDB code: 1uyp:

Sodium binding site 1 out of 1 in 1uyp

Go back to Sodium Binding Sites List in 1uyp
Sodium binding site 1 out of 1 in the The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Three-Dimensional Structure of Beta-Fructosidase (Invertase) From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1438

b:46.0
occ:1.00
 O3 A:CIT1436 1.9 49.6 1.0
O A:HOH2012 2.4 39.8 1.0
O4 A:CIT1436 2.5 51.1 1.0
C5 A:CIT1436 2.6 51.1 1.0
CB A:MET109 3.7 24.2 1.0
CB A:TYR119 4.0 30.4 1.0
CA A:TYR119 4.0 30.6 1.0
C4 A:CIT1436 4.1 50.2 1.0
CD1 A:TYR119 4.1 32.7 1.0
O2 A:CIT1436 4.2 50.3 1.0
CE2 A:PHE86 4.3 28.6 1.0
CE A:MET109 4.3 30.2 1.0
CG A:MET109 4.4 25.6 1.0
N A:TYR119 4.5 29.9 1.0
CG A:TYR119 4.5 31.3 1.0
C1 A:CIT1436 4.7 50.3 1.0
CZ A:PHE172 4.7 36.6 1.0
N A:MET109 4.7 23.0 1.0
CE1 A:PHE172 4.8 34.9 1.0
CA A:MET109 4.8 23.9 1.0
CG2 A:VAL117 4.9 27.1 1.0
C A:LYS118 4.9 30.3 1.0
O A:LYS118 5.0 31.6 1.0
O A:VAL117 5.0 26.8 1.0

Reference:

F.Alberto, C.Bignon, G.Sulzenbacher, B.Henrissat, M.Czjzek. The Three-Dimensional Structure of Invertase (Beta-Fructosidase) From Thermotoga Maritima Reveals A Bimodular Arrangement and An Evolutionary Relationship Between Retaining and Inverting Glycosidases. J. Biol. Chem. V. 279 18903 2004.
ISSN: ISSN 0021-9258
PubMed: 14973124
DOI: 10.1074/JBC.M313911200
Page generated: Sun Oct 6 22:49:22 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy