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Sodium in PDB 1uy1: Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry

Protein crystallography data

The structure of Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry, PDB code: 1uy1 was solved by A.L.Van Bueren, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 83.438, 83.438, 44.776, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 17.8

Other elements in 1uy1:

The structure of Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry (pdb code 1uy1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry, PDB code: 1uy1:

Sodium binding site 1 out of 1 in 1uy1

Go back to Sodium Binding Sites List in 1uy1
Sodium binding site 1 out of 1 in the Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Binding Sub-Site Dissection of A Family 6 Carbohydrate-Binding Module By X-Ray Crystallography and Isothermal Titration Calorimetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1146

b:36.7
occ:1.00
OG A:SER35 2.5 30.7 1.0
CB A:SER35 3.4 27.0 1.0
CA A:SER35 3.9 27.0 1.0
O A:SER34 4.3 26.4 1.0
N A:SER35 4.5 25.5 1.0
C A:SER34 4.7 25.1 1.0
O A:HOH2028 4.8 29.2 1.0

Reference:

A.L.Van Bueren, A.B.Boraston. Binding Sub-Site Dissection of A Carbohydrate-Binding Module Reveals the Contribution of Entropy to Oligosaccharide Recognition at "Non-Primary" Binding Subsites. J.Mol.Biol. V. 340 869 2004.
ISSN: ISSN 0022-2836
PubMed: 15223327
DOI: 10.1016/J.JMB.2004.05.038
Page generated: Tue Dec 15 05:37:11 2020

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