Atomistry » Sodium » PDB 1ubs-1v54 » 1uxt
Atomistry »
  Sodium »
    PDB 1ubs-1v54 »
      1uxt »

Sodium in PDB 1uxt: Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax

Enzymatic activity of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax

All present enzymatic activity of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax:
1.2.1.9;

Protein crystallography data

The structure of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax, PDB code: 1uxt was solved by E.Lorentzen, R.Hensel, E.Pohl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.20
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 185.347, 185.347, 134.697, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 24.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax (pdb code 1uxt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax, PDB code: 1uxt:

Sodium binding site 1 out of 1 in 1uxt

Go back to Sodium Binding Sites List in 1uxt
Sodium binding site 1 out of 1 in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1504

b:55.4
occ:1.00
 O A:GLY255 2.4 54.0 1.0
O A:HOH2142 2.4 55.7 1.0
O A:HOH2145 2.5 50.5 1.0
O A:HOH2131 2.6 51.6 1.0
O A:HOH2129 2.6 56.3 1.0
C A:GLY255 3.4 54.4 1.0
CA A:GLY256 3.9 53.8 1.0
N A:GLY256 4.1 54.0 1.0
OD1 A:ASP234 4.1 63.0 1.0
O A:ALA232 4.3 59.5 1.0
C A:GLY256 4.3 53.0 1.0
N A:VAL257 4.3 52.2 1.0
CA A:GLY255 4.5 54.1 1.0
CE A:LYS258 4.5 55.6 1.0
O A:VAL254 4.6 55.5 1.0
O A:VAL257 4.6 51.0 1.0
NZ A:LYS258 4.7 53.1 1.0

Reference:

E.Lorentzen, R.Hensel, T.Knura, H.Ahmed, E.Pohl. Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase From Thermoproteus Tenax J.Mol.Biol. V. 341 815 2004.
ISSN: ISSN 0022-2836
PubMed: 15288789
DOI: 10.1016/J.JMB.2004.05.032
Page generated: Sun Oct 6 22:48:17 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy