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Sodium in PDB 1uxr: Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax

Enzymatic activity of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax

All present enzymatic activity of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax:
1.2.1.9;

Protein crystallography data

The structure of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax, PDB code: 1uxr was solved by E.Lorentzen, R.Hensel, E.Pohl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.30
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 185.350, 185.350, 134.560, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 22.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax (pdb code 1uxr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax, PDB code: 1uxr:

Sodium binding site 1 out of 1 in 1uxr

Go back to Sodium Binding Sites List in 1uxr
Sodium binding site 1 out of 1 in the Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis For Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1504

b:39.4
occ:1.00
 O A:GLY255 2.4 41.6 1.0
O A:HOH2228 2.5 38.3 1.0
O A:HOH2249 2.6 37.7 1.0
O A:HOH2231 2.7 38.2 1.0
C A:GLY255 3.5 42.8 1.0
CA A:GLY256 3.9 40.9 1.0
O A:HOH2223 4.0 68.0 1.0
OD1 A:ASP234 4.1 41.7 1.0
N A:GLY256 4.2 41.8 1.0
O A:ALA232 4.3 45.2 1.0
N A:VAL257 4.3 38.5 1.0
C A:GLY256 4.4 39.5 1.0
CE A:LYS258 4.4 44.5 1.0
CA A:GLY255 4.6 42.3 1.0
O A:VAL257 4.6 37.4 1.0
O A:VAL254 4.6 44.0 1.0
NZ A:LYS258 4.9 44.1 1.0

Reference:

E.Lorentzen, R.Hensel, T.Knura, H.Ahmed, E.Pohl. Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase From Thermoproteus Tenax J.Mol.Biol. V. 341 815 2004.
ISSN: ISSN 0022-2836
PubMed: 15288789
DOI: 10.1016/J.JMB.2004.05.032
Page generated: Tue Dec 15 05:37:08 2020

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