Chemical elements
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in the structure of Porcine Pancreatic Elastase/Xe-Complex (pdb 1uo6)

The binding sites of Sodium atom in the structure of Porcine Pancreatic Elastase/Xe-Complex (pdb code 1uo6). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 1uo6 structure was solved by C.MUELLER-DIECKMANN, M.POLENTARUTTI, K.DJINOVIC-CARUGO, S.PANJIKAR, P.A.TUCKER, M.S.WEISS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)40.0-1.6
Space groupP212121
a (A)50.170
b (A)58.060
c (A)74.340
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.4
Rfree (%)20.8

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 1uo6

Sodium binding site 1 out of 1 in 1uo6
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 1uo6
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1uo6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu59, A: His60, A: Asn61, A: Leu62, A: Asn63, A: Gln64, A: Asn65, A: Asp66, A: Glu69, A: Tyr71, A: Hoh2053,

conact list:

AtomAtomDistance (A)
NaOE1 A:Glu592.51
NaOE2 A:Glu593.93
NaCD A:Glu593.53
NaCG A:Glu594.73
NaN A:His604.61
NaO A:Asn612.50
NaN A:Asn613.98
NaCB A:Asn614.46
NaC A:Asn613.63
NaCA A:Asn614.25
NaO A:Leu624.76
NaN A:Leu624.55
NaC A:Leu624.57
NaCA A:Leu624.64
NaN A:Asn634.97
NaO A:Gln642.53
NaN A:Gln644.33
NaC A:Gln643.71
NaCA A:Gln644.64
NaN A:Asn654.48
NaC A:Asn654.38
NaCA A:Asn654.32
NaN A:Asp663.76
NaCB A:Asp664.08
NaOD2 A:Asp662.62
NaOD1 A:Asp664.30
NaCG A:Asp663.48
NaCA A:Asp664.54
NaOE1 A:Glu694.55
NaOE2 A:Glu692.47
NaCD A:Glu693.50
NaCG A:Glu693.89
NaOH A:Tyr714.92
NaO A:Hoh20533.02

interactive model:

© Copyright 2008-2012 by