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Sodium in PDB 1uo6: Porcine Pancreatic Elastase/Xe-Complex

Enzymatic activity of Porcine Pancreatic Elastase/Xe-Complex

All present enzymatic activity of Porcine Pancreatic Elastase/Xe-Complex:
3.4.21.36;

Protein crystallography data

The structure of Porcine Pancreatic Elastase/Xe-Complex, PDB code: 1uo6 was solved by C.Mueller-Dieckmann, M.Polentarutti, K.Djinovic-Carugo, S.Panjikar, P.A.Tucker, M.S.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.170, 58.060, 74.340, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.8

Other elements in 1uo6:

The structure of Porcine Pancreatic Elastase/Xe-Complex also contains other interesting chemical elements:

Xenon (Xe) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Porcine Pancreatic Elastase/Xe-Complex (pdb code 1uo6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Porcine Pancreatic Elastase/Xe-Complex, PDB code: 1uo6:

Sodium binding site 1 out of 1 in 1uo6

Go back to Sodium Binding Sites List in 1uo6
Sodium binding site 1 out of 1 in the Porcine Pancreatic Elastase/Xe-Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Porcine Pancreatic Elastase/Xe-Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1245

b:8.0
occ:1.00
OE2 A:GLU69 2.5 8.6 1.0
O A:ASN61 2.5 10.4 1.0
OE1 A:GLU59 2.5 12.8 1.0
O A:GLN64 2.5 14.5 1.0
OD2 A:ASP66 2.6 10.6 1.0
O A:HOH2053 3.0 35.1 1.0
CG A:ASP66 3.5 11.6 1.0
CD A:GLU69 3.5 10.8 1.0
CD A:GLU59 3.5 16.3 1.0
C A:ASN61 3.6 9.7 1.0
C A:GLN64 3.7 14.7 1.0
N A:ASP66 3.8 11.1 1.0
CG A:GLU69 3.9 10.0 1.0
OE2 A:GLU59 3.9 15.0 1.0
N A:ASN61 4.0 8.4 1.0
CB A:ASP66 4.1 10.3 1.0
CA A:ASN61 4.3 8.9 1.0
OD1 A:ASP66 4.3 10.2 1.0
CA A:ASN65 4.3 13.3 1.0
N A:GLN64 4.3 14.7 1.0
C A:ASN65 4.4 12.4 1.0
CB A:ASN61 4.5 10.2 1.0
N A:ASN65 4.5 13.7 1.0
CA A:ASP66 4.5 11.3 1.0
OE1 A:GLU69 4.5 11.1 1.0
N A:LEU62 4.6 10.3 1.0
C A:LEU62 4.6 13.8 1.0
N A:HIS60 4.6 7.3 1.0
CA A:LEU62 4.6 11.8 1.0
CA A:GLN64 4.6 15.1 1.0
CG A:GLU59 4.7 11.0 1.0
O A:LEU62 4.8 14.5 1.0
OH A:TYR71 4.9 16.7 1.0
N A:ASN63 5.0 14.4 1.0

Reference:

C.Mueller-Dieckmann, M.Polentarutti, K.Djinovic-Carugo, S.Panjikar, P.A.Tucker, M.S.Weiss. On the Routine Use of Soft X-Rays in Macromolecular Crystallography. Part II. Data-Collection Wavelength and Scaling Models Acta Crystallogr.,Sect.D V. 60 28 2004.
ISSN: ISSN 0907-4449
PubMed: 14684889
DOI: 10.1107/S0907444903020833
Page generated: Tue Dec 15 05:37:00 2020

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