Sodium in PDB 1ud0: Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70

The structure of Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70, PDB code: 1ud0 was solved by C.C.Chou, F.Forouhar, Y.H.Yeh, C.Wang, C.D.Hsiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.93 / 3.45
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	117.479, 117.479, 163.777, 90.00, 90.00, 120.00
R / Rfree (%)	24.9 / 30.9

The binding sites of Sodium atom in the Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70 (pdb code 1ud0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70, PDB code: 1ud0:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na701 b:34.1 occ:0.50 OE2 B:GLU565 3.0 44.0 1.0 OE1 B:GLU565 3.4 44.0 1.0 CD B:GLU565 3.5 44.0 1.0 NZ B:LYS569 4.6 44.0 1.0 CG B:GLU565 4.9 44.0 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na702 b:25.8 occ:1.00 OD1 D:ASN563 3.0 44.0 1.0 OD1 D:ASP564 3.1 44.0 1.0 N D:ASP564 4.0 44.0 1.0 CG D:ASN563 4.1 44.0 1.0 CG D:ASP564 4.2 44.0 1.0 CA D:ASN563 4.5 44.0 1.0 CB D:ASP564 4.5 44.0 1.0 CB D:ASN563 4.7 44.0 1.0 C D:ASN563 4.8 44.0 1.0 CA D:ASP564 4.9 44.0 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na703 b:23.9 occ:1.00 NE2 D:HIS594 3.1 44.0 1.0 OE2 D:GLU598 3.1 44.0 1.0 OE1 D:GLU598 3.3 44.0 1.0 CD D:GLU598 3.5 44.0 1.0 CD2 D:HIS594 3.7 44.0 1.0 OE1 A:GLN568 3.8 44.0 1.0 CE1 D:HIS594 4.2 44.0 1.0 OE1 D:GLN595 4.6 44.0 1.0 CD A:GLN568 4.6 44.0 1.0 CG D:GLU598 4.8 44.0 1.0

C.C.Chou, F.Forouhar, Y.H.Yeh, H.L.Shr, C.Wang, C.D.Hsiao. Crystal Structure of the C-Terminal 10-kDa Subdomain of HSC70 J.Biol.Chem. V. 278 30311 2003.
ISSN: ISSN 0021-9258
PubMed: 12773536
DOI: 10.1074/JBC.M304563200