Sodium in PDB 1tae: Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal

All present enzymatic activity of Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal:
6.5.1.2;

The structure of Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal, PDB code: 1tae was solved by K.S.Gajiwala, C.Pinko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.77 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.296, 135.179, 115.797, 90.00, 102.29, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Sodium atom in the Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal (pdb code 1tae). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal, PDB code: 1tae:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal within 5.0Å range: probe atom residue distance (Å) B Occ B:Na531 b:29.6 occ:1.00 OE2 B:GLU38 2.8 71.6 1.0 ND2 B:ASN200 3.1 47.9 1.0 O B:HOH550 3.6 31.5 1.0 OD1 B:ASP39 3.6 39.4 1.0 N B:ASP39 3.7 30.6 1.0 CG B:ASP39 3.9 39.4 1.0 CB B:ASP39 4.0 39.4 1.0 CD B:GLU38 4.1 71.6 1.0 CG B:ASN200 4.3 47.9 1.0 CA B:GLU38 4.4 32.1 1.0 CA B:ASP39 4.5 30.6 1.0 C B:GLU38 4.6 32.1 1.0 OD2 B:ASP39 4.7 39.4 1.0 CB B:GLU38 4.7 71.6 1.0 CB B:ASN200 4.8 47.9 1.0 OE1 B:GLU38 4.8 71.6 1.0 CG B:PRO318 4.9 21.1 1.0

Sodium binding site 2 out of 2 in the Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal within 5.0Å range: probe atom residue distance (Å) B Occ D:Na532 b:34.5 occ:1.00 O D:HOH559 3.3 44.0 1.0 ND2 D:ASN200 3.7 70.5 1.0 OD1 D:ASP39 3.8 41.3 1.0 CG D:ASP39 4.0 41.3 1.0 N D:ASP39 4.0 33.7 1.0 CB D:ASP39 4.1 41.3 1.0 OE1 D:GLU38 4.1 47.9 1.0 CG D:GLU38 4.1 47.9 1.0 CG D:PRO318 4.4 33.4 1.0 CD D:GLU38 4.5 47.9 1.0 CA D:ASP39 4.7 33.7 1.0 OD2 D:ASP39 4.8 41.3 1.0 CG D:ASN200 4.8 70.5 1.0 CA D:GLU38 4.9 24.6 1.0 CD D:PRO318 5.0 33.4 1.0

K.S.Gajiwala, C.Pinko. Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal. Structure V. 12 1449 2004.
ISSN: ISSN 0969-2126
PubMed: 15296738
DOI: 10.1016/J.STR.2004.05.017